Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p12880 Brassica napus HOM05D000069 ORTHO05D024650 1.9e-50 202.2 105 100.0
BolC3t13751H Brassica oleracea HOM05D000069 ORTHO05D024650 9.0e-48 193.4 105 97.1
A03p11180 Brassica napus HOM05D000069 ORTHO05D041453 5.5e-37 157.5 94 85.1
BraA03t10434Z Brassica rapa HOM05D000069 ORTHO05D041453 3.6e-36 154.8 90 86.7
C03p12890 Brassica napus HOM05D000069 ORTHO05D021930 4.5e-31 137.9 94 75.5
BcaB01g04655 Brassica carinata HOM05D000069 ORTHO05D021930 7.7e-31 137.1 104 68.3
BolC3t13753H Brassica oleracea HOM05D000069 ORTHO05D021930 7.7e-31 137.1 94 75.5
C03p12980 Brassica napus HOM05D000069 ORTHO05D021930 1.3e-30 136.3 105 73.3
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 5.0e-30 134.4 94 73.4
BraA03t10432Z Brassica rapa HOM05D000069 ORTHO05D021930 5.0e-30 134.4 94 73.4
Thhalv10013934m.g Eutrema salsugineum HOM05D000069 ORTHO05D005129 2.0e-26 122.5 105 67.6
Sp6g21960 Schrenkiella parvula HOM05D000069 ORTHO05D005129 3.3e-26 121.7 105 66.7
AT5G60360 Arabidopsis thaliana HOM05D000069 ORTHO05D005129 1.7e-25 119.4 105 64.8
CARHR274030 Cardamine hirsuta HOM05D000069 ORTHO05D005129 1.7e-25 119.4 105 65.7
BcaB05g22636 Brassica carinata HOM05D000069 ORTHO05D005129 8.2e-25 117.1 105 61.9
BcaC03g13979 Brassica carinata HOM05D000069 ORTHO05D005129 1.4e-24 116.3 106 62.3
BcaC04g19697 Brassica carinata HOM05D000069 ORTHO05D005129 1.4e-24 116.3 105 62.9
BolC9t58172H Brassica oleracea HOM05D000069 ORTHO05D005129 1.4e-24 116.3 105 62.9
Carub.0008s2106 Capsella rubella HOM05D000069 ORTHO05D005129 1.4e-24 116.3 105 63.8
BcaB08g36338 Brassica carinata HOM05D000280 ORTHO05D000632 3.1e-24 115.2 104 63.5
C09p52990 Brassica napus HOM05D000069 ORTHO05D005129 3.1e-24 115.2 105 61.9
A10p17590 Brassica napus HOM05D000069 ORTHO05D005129 4.1e-24 114.8 105 61.9
BraA02t05735Z Brassica rapa HOM05D000069 ORTHO05D005129 5.3e-24 114.4 105 61.0
Aa31LG1G12410 Aethionema arabicum HOM05D000069 ORTHO05D005129 9.1e-24 113.6 100 60.0
BraA10t43839Z Brassica rapa HOM05D000069 ORTHO05D005129 1.2e-23 113.2 105 61.9
C02p11790 Brassica napus HOM05D000069 ORTHO05D005129 2.0e-23 112.5 106 59.4
AL8G36970 Arabidopsis lyrata HOM05D000069 ORTHO05D005129 2.7e-23 112.1 105 61.9
BolC2t07274H Brassica oleracea HOM05D000069 ORTHO05D005129 2.7e-23 112.1 105 60.0
AT3G45310 Arabidopsis thaliana HOM05D000069 ORTHO05D005129 1.0e-22 110.2 101 58.4
THA.LOC104814838 Tarenaya hassleriana HOM05D000069 ORTHO05D005129 1.7e-22 109.4 101 57.4
AL5G23920 Arabidopsis lyrata HOM05D000069 ORTHO05D005129 1.5e-21 106.3 105 57.1
Carub.0005s1119 Capsella rubella HOM05D000069 ORTHO05D005129 7.2e-21 104.0 106 57.5
COL.COLO4_18094 Corchorus olitorius HOM05D000069 ORTHO05D005129 2.7e-20 102.1 78 62.8
Aa31LG4G14630 Aethionema arabicum HOM05D000069 ORTHO05D005129 8.0e-20 100.5 103 54.4
Thhalv10002588m.g Eutrema salsugineum HOM05D000069 ORTHO05D005129 1.4e-19 99.8 105 54.3
Cpa.g.sc28.31 Carica papaya HOM05D000069 ORTHO05D005129 6.8e-19 97.4 93 53.8
ClCG03G015060 Citrullus lanatus HOM05D000069 ORTHO05D005129 1.2e-18 96.7 93 57.0
Haze_26016 Corylus avellana HOM05D000069 ORTHO05D005129 7.5e-18 94.0 78 56.4
Eucgr.C00803 Eucalyptus grandis HOM05D000069 ORTHO05D005129 7.5e-18 94.0 98 54.1
MELO3C015523.2 Cucumis melo HOM05D000069 ORTHO05D005129 1.3e-17 93.2 94 54.3
CsaV3_1G041070 Cucumis sativus L. HOM05D000069 ORTHO05D005129 1.3e-17 93.2 93 55.9
RcHm_v2.0_Chr2g0095151 Rosa chinensis HOM05D000069 ORTHO05D005129 1.3e-17 93.2 93 54.8
HanXRQChr03g0070541 Helianthus annuus HOM05D000069 ORTHO05D024650 2.2e-17 92.4 71 56.3
Sed0002748 Sechium edule HOM05D000069 ORTHO05D005129 2.2e-17 92.4 96 52.1
Cfa002985 Carpinus fangiana HOM05D000069 ORTHO05D005129 2.8e-17 92.0 78 56.4
HanXRQChr10g0319701 Helianthus annuus HOM05D000069 ORTHO05D005129 2.8e-17 92.0 105 46.7
CARHR150540 Cardamine hirsuta HOM05D000069 ORTHO05D005129 3.7e-17 91.7 107 50.5
Ciclev10008748m.g Citrus clementina HOM05D000069 ORTHO05D005129 3.7e-17 91.7 79 57.0
HanXRQChr12g0354361 Helianthus annuus HOM05D000069 ORTHO05D005129 4.8e-17 91.3 71 54.9
CiPaw.03G206000 Carya illinoinensis HOM05D000069 ORTHO05D005129 6.3e-17 90.9 99 49.5
TWI63G0960 Tripterygium wilfordii HOM05D000069 ORTHO05D005129 6.3e-17 90.9 96 49.0
Ah.09g231630 Amaranthus hybridus HOM05D000069 ORTHO05D005129 8.3e-17 90.5 71 57.7
Dinv42396 Davidia involucrata HOM05D000069 ORTHO05D005129 8.3e-17 90.5 99 49.5
Gohir.A13G190600 Gossypium hirsutum HOM05D000069 ORTHO05D005129 8.3e-17 90.5 94 50.0
Gohir.D13G196365 Gossypium hirsutum HOM05D000069 ORTHO05D005129 8.3e-17 90.5 96 50.0
Gorai.013G224100 Gossypium raimondii HOM05D000069 ORTHO05D005129 8.3e-17 90.5 96 50.0
SGA_v2.0_scaffold385G50452 Striga asiatica HOM05D000069 ORTHO05D005129 8.3e-17 90.5 102 48.0
MD02G1091800 Malus domestica HOM05D000069 ORTHO05D005129 1.1e-16 90.1 98 52.0
Manes.16G095100 Manihot esculenta HOM05D000069 ORTHO05D005129 1.1e-16 90.1 97 51.5
Actinidia39658 Actinidia chinensis HOM05D000069 ORTHO05D005129 1.4e-16 89.7 73 58.9
Peaxi162Scf00288g00045 Petunia axillaris HOM05D000069 ORTHO05D005129 1.4e-16 89.7 71 53.5
Actinidia30223 Actinidia chinensis HOM05D000069 ORTHO05D005129 1.8e-16 89.4 105 45.7
Potri.006G141700 Populus trichocarpa HOM05D000069 ORTHO05D005129 1.8e-16 89.4 96 53.1
MD15G1217900 Malus domestica HOM05D000069 ORTHO05D005129 2.4e-16 89.0 98 51.0
CAN.G81.9 Capsicum annuum HOM05D000069 ORTHO05D005129 4.1e-16 88.2 71 56.3
Lj4g0001490 Lotus japonicus HOM05D000069 ORTHO05D005129 4.1e-16 88.2 96 50.0
TAR636G0095 Trochodendron aralioides HOM05D000069 ORTHO05D005129 4.1e-16 88.2 71 54.9
Hma1.2p1_0179F.1_g079500 Hydrangea macrophylla HOM05D000069 ORTHO05D005129 5.4e-16 87.8 69 58.0
Psat4g018080 Pisum sativum HOM05D000069 ORTHO05D005129 5.4e-16 87.8 93 48.4
PGR142G4027 Punica granatum HOM05D000069 ORTHO05D005129 5.4e-16 87.8 97 48.5
Atru.chr7.1711 Acer truncatum HOM05D000069 ORTHO05D005129 7.0e-16 87.4 98 51.0
Lsat_1_v5_gn_5_140700 Lactuca sativa HOM05D000069 ORTHO05D005129 7.0e-16 87.4 108 43.5
Manes.03G040700 Manihot esculenta HOM05D000069 ORTHO05D005129 7.0e-16 87.4 97 47.4
SGA_v2.0_scaffold21G09489 Striga asiatica HOM05D000069 ORTHO05D005129 7.0e-16 87.4 72 54.2
Gohir.D06G075600 Gossypium hirsutum HOM05D000069 ORTHO05D005129 9.1e-16 87.0 99 46.5
Gorai.010G088500 Gossypium raimondii HOM05D000069 ORTHO05D005129 9.1e-16 87.0 99 46.5
Lalb_Chr13g0299441 Lupinus albus HOM05D000069 ORTHO05D005129 9.1e-16 87.0 71 52.1
Medtr4g125300 Medicago truncatula HOM05D000069 ORTHO05D005129 9.1e-16 87.0 76 52.6
Gohir.A06G076600 Gossypium hirsutum HOM05D000069 ORTHO05D005129 1.2e-15 86.7 93 48.4
Peaxi162Scf00127g00166 Petunia axillaris HOM05D000069 ORTHO05D005129 1.2e-15 86.7 71 52.1
Thecc.09G076500 Theobroma cacao HOM05D000069 ORTHO05D005129 1.2e-15 86.7 102 47.1
FAN23G0626 Fragaria x ananassa HOM05D000069 ORTHO05D005129 1.6e-15 86.3 100 47.0
Duzib187G0835 Durio zibethinus HOM05D000069 ORTHO05D005129 2.0e-15 85.9 78 52.6
FvH4_1g08760 Fragaria vesca HOM05D000069 ORTHO05D005129 2.0e-15 85.9 100 47.0
FAN19G0892 Fragaria x ananassa HOM05D000069 ORTHO05D005129 2.0e-15 85.9 100 47.0
FAN28G0544 Fragaria x ananassa HOM05D000069 ORTHO05D005129 2.0e-15 85.9 100 46.0
Lj4C913T13 Lonicera japonica HOM05D000069 ORTHO05D005129 2.0e-15 85.9 104 43.3
Sabra06G0110800 Salix brachista HOM05D000069 ORTHO05D005129 2.0e-15 85.9 94 48.9
arahy.Tifrunner.gnm1.ann1.A7W2G8 Arachis hypogaea HOM05D000069 ORTHO05D005129 2.7e-15 85.5 80 53.8
arahy.Tifrunner.gnm1.ann1.AWY9EV Arachis hypogaea HOM05D000069 ORTHO05D005129 2.7e-15 85.5 80 53.8
Migut.L01567 Erythranthe guttata HOM05D000069 ORTHO05D005129 2.7e-15 85.5 71 53.5
MSTRG.10509 Avicennia marina HOM05D000069 ORTHO05D005129 3.5e-15 85.1 71 52.1
FAN26G2153 Fragaria x ananassa HOM05D000069 ORTHO05D005129 3.5e-15 85.1 100 47.0
FAN26G2249 Fragaria x ananassa HOM05D000069 ORTHO05D005129 3.5e-15 85.1 100 47.0
Duzib168G1216 Durio zibethinus HOM05D000069 ORTHO05D005129 4.5e-15 84.7 78 51.3
QL11p000791 Quercus lobata HOM05D000069 ORTHO05D005129 4.5e-15 84.7 90 50.0
EL10Ac8g19055 Beta vulgaris HOM05D000069 ORTHO05D005129 5.9e-15 84.3 78 52.6
Cc06_g12200 Coffea canephora HOM05D000069 ORTHO05D005129 5.9e-15 84.3 71 53.5
Sp5g15980 Schrenkiella parvula HOM05D000069 ORTHO05D005129 5.9e-15 84.3 71 60.6
Hund08782 Selenicereus undatus HOM05D000069 ORTHO05D005129 5.9e-15 84.3 71 52.1
TPR.G12591 Trifolium pratense HOM05D000069 ORTHO05D005129 5.9e-15 84.3 75 52.0
AUR62028933 Chenopodium quinoa HOM05D000069 ORTHO05D005129 7.7e-15 84.0 71 53.5
Gohir.A05G034000 Gossypium hirsutum HOM05D000069 ORTHO05D005129 7.7e-15 84.0 91 46.2
CANSAT56G4367 Cannabis sativa HOM05D000069 ORTHO05D005129 1.0e-14 83.6 97 47.4
Gohir.D05G035400 Gossypium hirsutum HOM05D000069 ORTHO05D005129 1.3e-14 83.2 91 45.1
PGSC0003DMG400027888 Solanum tuberosum HOM05D000069 ORTHO05D005129 1.3e-14 83.2 105 47.6
Lalb_Chr12g0200171 Lupinus albus HOM05D000069 ORTHO05D005129 1.7e-14 82.8 71 52.1
TAR624G1160 Trochodendron aralioides HOM05D000069 ORTHO05D005129 1.7e-14 82.8 71 54.9
vmacro06345 Vaccinium macrocarpon HOM05D000069 ORTHO05D005129 1.7e-14 82.8 99 46.5
Dinv25557 Davidia involucrata HOM05D000069 ORTHO05D005129 2.2e-14 82.4 102 47.1
Oeu036222.1 Olea europaea HOM05D000069 ORTHO05D005129 2.2e-14 82.4 71 52.1
Prupe.7G198500 Prunus persica HOM05D000069 ORTHO05D005129 2.2e-14 82.4 98 48.0
ATR0598G317 Amborella trichopoda HOM05D000069 ORTHO05D005129 2.9e-14 82.0 99 40.4
Nn8g38632 Nelumbo nucifera HOM05D000069 ORTHO05D005129 2.9e-14 82.0 78 51.3
Oeu035913.1 Olea europaea HOM05D000069 ORTHO05D005129 2.9e-14 82.0 71 53.5
Migut.J00923 Erythranthe guttata HOM05D000069 ORTHO05D005129 3.8e-14 81.6 71 53.5
Nitab4.5_0000024g0250 Nicotiana tabacum HOM05D000069 ORTHO05D005129 3.8e-14 81.6 71 50.7
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 3.8e-14 81.6 73 53.4
Ca_21324_v3 Cicer arietinum L. HOM05D000069 ORTHO05D005129 5.0e-14 81.3 77 46.8
Gorai.009G036000 Gossypium raimondii HOM05D000069 ORTHO05D005129 5.0e-14 81.3 91 44.0
CSS0033635 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D005129 8.5e-14 80.5 67 56.7
Duzib150G1346 Durio zibethinus HOM05D000069 ORTHO05D005129 8.5e-14 80.5 96 42.7
Nitab4.5_0001738g0010 Nicotiana tabacum HOM05D000069 ORTHO05D005129 8.5e-14 80.5 103 40.8
arahy.Tifrunner.gnm1.ann1.AJY7W8 Arachis hypogaea HOM05D000069 ORTHO05D005129 1.5e-13 79.7 99 45.5
TWI34G0023 Tripterygium wilfordii HOM05D000069 ORTHO05D005129 1.5e-13 79.7 98 44.9
SalBow6G2368 Salvia bowleyana HOM05D000069 ORTHO05D005129 1.9e-13 79.3 71 50.7
DCAR_028336 Daucus carota HOM05D000069 ORTHO05D005129 2.5e-13 79.0 101 38.6
GSVIVG01015078001 Vitis vinifera HOM05D000069 ORTHO05D005129 2.5e-13 79.0 106 41.5
CDE06G2324 Ceratophyllum demersum HOM05D000069 ORTHO05D005129 5.5e-13 77.8 98 42.9
Glyma.17G049000 Glycine max HOM05D000069 ORTHO05D005129 5.5e-13 77.8 64 51.6
ECA234G2056 Erigeron canadensis HOM05D000069 ORTHO05D005129 7.2e-13 77.4 70 50.0
Solyc07g041900.3 Solanum lycopersicum HOM05D000069 ORTHO05D005129 7.2e-13 77.4 80 50.0
Sopen07g021400 Solanum pennellii HOM05D000069 ORTHO05D005129 7.2e-13 77.4 80 50.0
Aqoxy4G01200 Aquilegia oxysepala HOM05D000069 ORTHO05D005129 1.2e-12 76.6 71 49.3
Phvul.003G130550 Phaseolus vulgaris HOM05D000069 ORTHO05D005129 1.6e-12 76.3 85 42.4
Solyc07g041920.4 Solanum lycopersicum HOM05D000069 ORTHO05D005129 1.6e-12 76.3 105 44.8
PGSC0003DMG400019033 Solanum tuberosum HOM05D000069 ORTHO05D005129 1.6e-12 76.3 103 44.7
Sc08g0008910 Simmondsia chinensis HOM05D000069 ORTHO05D005129 2.1e-12 75.9 57 57.9
Sopen07g021390 Solanum pennellii HOM05D000069 ORTHO05D005129 2.1e-12 75.9 105 44.8
unitig_578.g16406 Utricularia gibba HOM05D000069 ORTHO05D005129 2.7e-12 75.5 101 37.6
VMungo1215G1158 Vigna mungo HOM05D000069 ORTHO05D005129 1.0e-11 73.6 89 44.9
Zm00001eb314220 Zea mays HOM05D000069 ORTHO05D005129 1.4e-11 73.2 82 45.1
PSO135G0430 Papaver somniferum HOM05D000069 ORTHO05D005129 1.8e-11 72.8 63 54.0
PSO724G0413 Papaver somniferum HOM05D000069 ORTHO05D005129 3.0e-11 72.0 63 52.4
Os09g0442300 Oryza sativa ssp. japonica HOM05D000069 ORTHO05D005129 6.8e-11 70.9 82 41.5
Phvul.009G227100 Phaseolus vulgaris HOM05D000069 ORTHO05D005129 7.5e-10 67.4 75 44.0
Eucgr.C00805 Eucalyptus grandis HOM05D000069 ORTHO05D005129 9.8e-10 67.0 64 53.1
VMungo1309G0480 Vigna mungo HOM05D000069 ORTHO05D005129 9.8e-10 67.0 75 44.0
Eucgr.C00804 Eucalyptus grandis HOM05D000069 ORTHO05D005129 2.2e-09 65.9 61 54.1
Eucgr.C00810 Eucalyptus grandis HOM05D000069 ORTHO05D005129 2.2e-09 65.9 64 51.6
Glyma.09G069800 Glycine max HOM05D000069 ORTHO05D005129 2.8e-09 65.5 64 46.9
AagrBONN_evm.TU.Sc2ySwM_362.492 Anthoceros agrestis HOM05D000069 ORTHO05D005129 1.1e-08 63.5 62 48.4
SEGI_06007 Sequoiadendron giganteum HOM05D000069 ORTHO05D005129 3.1e-08 62.0 93 38.7
Glyma.15G177800 Glycine max HOM05D000069 ORTHO05D005129 4.1e-08 61.6 64 43.8
Pp3c9_5330 Physcomitrium patens HOM05D000069 ORTHO05D005129 5.9e-07 57.8 60 48.3
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 7.7e-07 57.4 62 50.0
Mapoly0058s0002 Marchantia polymorpha HOM05D000069 ORTHO05D005129 3.8e-06 55.1 99 35.4
MBI13_g12060_MAGBIO Magnolia biondii HOM05D000069 ORTHO05D005129 8.6e-06 53.9 99 35.4


User provided reference genes

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