Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 6.3e-88 327.4 164 100.0
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.2e-59 233.4 169 79.9
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.6e-54 216.5 231 57.6
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 3.3e-52 208.8 279 49.5
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 1.6e-51 206.5 279 48.7
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 2.8e-51 205.7 279 48.7
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 8.0e-51 204.1 277 49.1
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 1.0e-50 203.8 279 48.0
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 1.0e-50 203.8 279 48.0
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 2.3e-50 202.6 277 48.4
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 6.3e-48 194.5 273 48.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 8.3e-48 194.1 147 72.8
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 7.0e-47 191.0 275 46.9
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 8.6e-45 184.1 145 69.7
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 5.8e-41 171.4 163 59.5
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 2.4e-39 166.0 277 40.1
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 3.9e-37 158.7 277 41.9
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 2.3e-34 149.4 273 38.1
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 6.8e-34 147.9 239 39.3
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 2.0e-33 146.4 236 39.8
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 2.0e-33 146.4 134 57.5
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 3.4e-33 145.6 151 57.0
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 4.4e-33 145.2 171 50.9
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 9.8e-33 144.1 121 63.6
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 1.3e-32 143.7 143 56.6
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 1.3e-32 143.7 102 69.6
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 1.7e-32 143.3 211 42.7
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 2.2e-32 142.9 126 59.5
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 2.2e-32 142.9 126 59.5
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 3.7e-32 142.1 233 39.9
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 3.7e-32 142.1 228 40.4
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 8.3e-32 141.0 211 42.7
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 8.3e-32 141.0 98 69.4
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.1e-31 140.6 230 39.1
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 1.4e-31 140.2 131 59.5
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.9e-31 139.8 147 55.1
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.9e-31 139.8 147 55.1
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 1.9e-31 139.8 128 58.6
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 2.4e-31 139.4 211 41.7
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 3.2e-31 139.0 126 60.3
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 3.2e-31 139.0 228 39.0
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 4.1e-31 138.7 119 60.5
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 5.4e-31 138.3 231 39.4
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 7.0e-31 137.9 253 36.8
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 7.0e-31 137.9 234 38.0
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 7.0e-31 137.9 230 37.4
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 1.2e-30 137.1 100 68.0
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.6e-30 136.7 253 36.4
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 1.6e-30 136.7 104 66.3
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 1.6e-30 136.7 126 57.9
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 1.6e-30 136.7 211 41.7
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 2.1e-30 136.3 233 37.8
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 2.1e-30 136.3 79 81.0
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 2.7e-30 136.0 211 41.7
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 2.7e-30 136.0 230 38.3
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 2.7e-30 136.0 229 38.0
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 3.5e-30 135.6 228 39.0
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 3.5e-30 135.6 211 40.3
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 4.6e-30 135.2 211 42.7
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 4.6e-30 135.2 211 42.7
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 6.0e-30 134.8 116 59.5
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 7.8e-30 134.4 210 41.4
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 7.8e-30 134.4 228 39.0
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.0e-29 134.0 253 35.6
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 1.0e-29 134.0 230 38.7
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 1.7e-29 133.3 223 38.1
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.7e-29 133.3 177 48.6
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 1.7e-29 133.3 228 39.5
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.7e-29 133.3 108 64.8
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 2.3e-29 132.9 96 70.8
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 2.3e-29 132.9 126 58.7
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 3.9e-29 132.1 76 82.9
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 3.9e-29 132.1 76 82.9
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 3.9e-29 132.1 138 55.8
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 5.0e-29 131.7 79 78.5
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 5.0e-29 131.7 214 39.7
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 6.6e-29 131.3 230 37.0
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 6.6e-29 131.3 236 37.7
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 8.6e-29 131.0 109 65.1
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 8.6e-29 131.0 273 35.2
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 1.1e-28 130.6 101 65.3
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 1.1e-28 130.6 239 37.2
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.5e-28 130.2 211 40.3
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.5e-28 130.2 237 35.9
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.3e-28 129.0 273 34.8
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 3.3e-28 129.0 149 52.3
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 4.3e-28 128.6 78 78.2
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 4.3e-28 128.6 209 40.7
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 5.6e-28 128.3 107 62.6
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 7.3e-28 127.9 212 39.6
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 7.3e-28 127.9 211 38.9
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 7.3e-28 127.9 102 64.7
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 2.8e-27 125.9 126 55.6
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 4.7e-27 125.2 218 37.6
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 4.7e-27 125.2 98 61.2
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.7e-27 125.2 78 78.2
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.7e-27 125.2 78 78.2
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 6.2e-27 124.8 111 58.6
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 6.2e-27 124.8 79 72.2
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 6.2e-27 124.8 77 75.3
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 8.1e-27 124.4 78 76.9
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 8.1e-27 124.4 109 58.7
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.1e-26 124.0 93 67.7
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.8e-26 123.2 230 35.7
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 2.3e-26 122.9 109 59.6
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 5.2e-26 121.7 82 73.2
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 6.8e-26 121.3 105 61.0
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 8.9e-26 120.9 78 75.6
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 8.9e-26 120.9 77 74.0
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 1.5e-25 120.2 107 57.9
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 4.4e-25 118.6 105 61.0
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.3e-24 117.1 120 58.3
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 1.9e-23 113.2 109 54.1
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.2e-23 112.5 230 36.5
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 5.4e-23 111.7 236 36.4
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 7.1e-23 111.3 78 65.4
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 7.8e-22 107.8 105 53.3
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 7.8e-22 107.8 108 52.8
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.3e-20 101.3 167 41.3
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 3.6e-19 99.0 168 40.5
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 4.7e-19 98.6 86 53.5
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 4.0e-18 95.5 105 49.5
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 6.8e-18 94.7 78 65.4
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 1.2e-17 94.0 97 54.6
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 2.6e-17 92.8 78 50.0
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 2.2e-16 89.7 78 55.1
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.4e-16 88.2 202 33.7
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 6.0e-14 81.6 91 50.5
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 1.3e-13 80.5 75 54.7
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 8.7e-13 77.8 74 48.6
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.4e-10 70.5 173 32.4
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 1.8e-10 70.1 56 55.4
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.9e-10 68.2 40 80.0
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 9.0e-10 67.8 67 56.7
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.0e-09 66.6 40 77.5
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.4e-09 65.5 152 32.2
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.4e-09 65.5 37 81.1
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 7.6e-09 64.7 62 56.5
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 1.7e-08 63.5 39 76.9
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 2.2e-08 63.2 57 52.6
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 1.9e-07 60.1 34 88.2
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 1.9e-07 60.1 34 88.2
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 3.2e-07 59.3 40 70.0
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 7.1e-07 58.2 77 44.2


User provided reference genes

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