Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 3.4e-155 551.6 275 100.0
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 4.6e-152 541.2 275 97.8
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 4.6e-152 541.2 275 97.8
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.6e-152 541.2 275 98.2
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 5.1e-151 537.7 275 97.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.0e-130 470.3 284 86.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.2e-127 458.0 273 85.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 5.9e-115 417.9 285 79.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 5.0e-114 414.8 287 77.7
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.6e-96 356.7 285 70.2
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.7e-96 355.1 292 69.2
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.0e-95 354.0 287 70.4
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 7.8e-91 337.8 288 67.4
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 9.9e-70 267.7 292 53.8
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 4.2e-68 262.3 299 56.9
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.6e-67 260.4 291 51.9
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.7e-66 254.6 280 56.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.8e-63 246.9 291 50.9
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.1e-63 246.1 292 52.4
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.4e-60 237.3 291 49.5
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.1e-60 235.0 281 49.8
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.6e-59 233.8 281 50.2
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.9e-59 231.5 281 49.8
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 6.6e-58 228.4 265 50.9
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.1e-57 227.6 292 49.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.1e-57 227.6 292 49.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 9.6e-57 224.6 327 45.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.8e-56 223.0 268 50.4
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.6e-56 222.6 290 46.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.6e-56 222.6 125 91.2
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-55 220.3 292 46.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.4e-55 219.9 287 48.4
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.0e-55 219.2 266 48.9
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 9.0e-55 218.0 292 45.9
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 9.0e-55 218.0 267 49.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.5e-54 215.7 290 46.2
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.8e-54 215.3 268 48.9
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 6.4e-53 211.8 291 47.1
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.1e-52 211.1 297 44.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.4e-52 209.9 291 44.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 4.2e-52 209.1 293 46.1
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.2e-51 207.6 301 42.2
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 6.0e-51 205.3 295 42.7
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.9e-50 202.6 295 43.4
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.7e-50 201.8 323 41.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.7e-50 201.8 323 41.8
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.7e-50 201.8 294 44.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.9e-49 200.3 210 54.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 5.6e-49 198.7 299 43.8
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 9.6e-49 198.0 290 43.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.8e-48 195.7 294 44.9
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 6.2e-48 195.3 296 44.6
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-46 190.3 284 44.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.6e-46 189.9 287 43.9
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.6e-46 189.9 302 41.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 5.8e-46 188.7 286 42.7
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.3e-45 187.6 277 46.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 8.4e-45 184.9 211 53.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.4e-44 184.1 287 43.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.2e-44 182.6 268 44.8
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 9.3e-44 181.4 279 40.5
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.2e-43 181.0 289 41.9
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.6e-43 180.6 229 46.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.0e-42 177.9 257 44.7
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.3e-42 177.6 290 40.3
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 5.1e-42 175.6 294 40.5
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 6.7e-42 175.3 292 41.1
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 7.4e-41 171.8 243 45.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.3e-40 171.0 244 44.7
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.3e-40 171.0 249 44.2
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 6.3e-40 168.7 296 41.2
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.3e-40 168.7 342 38.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.1e-39 167.9 292 40.4
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 3.1e-39 166.4 293 41.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.1e-39 166.0 293 41.0
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 9.0e-39 164.9 292 38.4
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 7.6e-38 161.8 213 46.0
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 7.6e-38 161.8 293 38.2
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 7.6e-38 161.8 212 47.2
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.0e-37 161.4 390 34.4
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.2e-37 160.2 295 40.0
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.4e-36 157.5 315 34.9
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.5e-36 156.8 283 38.2
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.5e-36 155.6 403 32.8
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.1e-35 152.1 269 39.8
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.3e-34 151.0 287 40.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.3e-34 150.2 301 37.9
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 5.1e-34 149.1 224 42.9
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-33 147.9 286 37.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.3e-33 146.4 277 39.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-32 144.4 273 39.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.7e-32 142.9 246 41.1
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.8e-32 142.5 273 39.2
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.4e-31 140.2 282 35.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.3e-31 139.0 237 40.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.5e-30 137.5 189 45.0
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.5e-30 136.0 287 35.5
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.0e-29 134.8 212 40.1
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.9e-29 133.3 163 49.1
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.0e-29 132.5 291 35.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.1e-28 131.3 238 38.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.2e-28 129.8 289 35.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.2e-27 127.9 298 32.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.6e-27 126.3 180 45.0
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.6e-27 125.9 251 38.2
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 4.6e-27 125.9 275 33.5
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.8e-26 124.0 258 34.5
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 4.3e-25 119.4 268 36.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.7e-24 117.5 304 33.2
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.7e-24 117.5 330 33.0
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.7e-24 117.5 213 39.4
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 2.8e-24 116.7 331 32.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.8e-24 115.9 252 34.5
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-22 111.3 161 44.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.0e-22 110.5 250 33.6
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.5e-22 109.4 215 39.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.0e-21 108.2 300 31.0
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 6.5e-21 105.5 241 34.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 4.2e-20 102.8 368 28.3
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.6e-19 99.8 149 41.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.1e-19 99.0 123 46.3
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.8e-18 97.4 271 32.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.8e-18 97.4 225 35.1
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.6e-17 93.6 157 41.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 9.7e-17 91.7 296 31.8
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.7e-16 89.7 283 29.3
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.1e-15 88.2 283 30.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.4e-15 87.8 217 32.7
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 7.7e-14 82.0 190 34.7
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.3e-13 81.3 135 37.8
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.2e-13 80.5 143 35.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.8e-13 79.7 208 31.7
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.0e-13 79.3 206 32.0
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.1e-12 78.2 206 31.6
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.5e-12 77.8 150 34.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 5.5e-12 75.9 183 33.3
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 9.4e-12 75.1 244 28.3
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.7e-11 73.6 83 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 8.2e-08 62.0 231 29.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.8e-07 60.8 81 42.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.6e-06 57.8 81 34.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 4.5e-06 56.2 74 43.2


User provided reference genes

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