Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 4.6e-128 461.5 274 100.0
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 2.3e-127 459.1 274 99.3
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 3.0e-119 432.2 239 99.2
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 1.2e-107 393.7 240 92.5
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 3.2e-105 385.6 240 86.2
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.9e-85 319.3 292 69.5
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 4.6e-83 312.0 253 73.9
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.7e-82 310.1 255 72.9
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.7e-82 310.1 255 72.9
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 7.3e-81 304.7 247 76.9
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 1.5e-78 297.0 251 74.9
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 4.4e-78 295.4 251 74.5
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 2.7e-75 286.2 252 73.8
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 4.6e-75 285.4 253 73.5
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 4.6e-75 285.4 253 73.5
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.0e-74 284.3 255 72.2
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 4.7e-72 275.4 252 70.6
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 2.9e-69 266.2 232 73.3
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 6.6e-66 255.0 256 69.9
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.4e-63 247.3 266 65.8
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 1.2e-62 244.2 249 64.3
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 4.6e-59 232.3 260 63.8
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 8.4e-53 211.5 258 53.1
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.3e-37 161.0 236 47.9
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 1.9e-33 147.1 296 45.9
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 3.1e-31 139.8 281 38.1
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.6e-30 136.7 341 34.9
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 4.9e-29 132.5 336 33.9
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 7.1e-28 128.6 337 33.5
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 9.3e-28 128.3 325 33.2
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.2e-27 127.9 351 33.0
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.6e-27 127.5 342 34.2
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.6e-27 125.9 352 32.7
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 6.0e-27 125.6 352 32.7
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.0e-26 124.8 329 35.0
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.0e-26 124.8 341 33.1
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 2.3e-26 123.6 339 31.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 3.0e-26 123.2 322 34.2
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 5.7e-25 119.0 335 37.6
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 9.7e-25 118.2 347 32.6
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 2.8e-24 116.7 338 32.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 3.7e-24 116.3 338 32.8
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 4.8e-24 115.9 264 38.3
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 4.8e-24 115.9 361 34.6
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.1e-23 114.8 300 35.7
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.1e-23 114.8 277 39.7
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.4e-23 114.4 326 32.2
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.8e-23 114.0 344 35.8
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 3.1e-23 113.2 345 31.9
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 4.1e-23 112.8 337 33.2
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.1e-23 112.8 299 33.8
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.2e-22 111.3 277 35.7
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.2e-22 111.3 296 33.1
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.5e-22 110.9 267 41.9
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 2.0e-22 110.5 275 37.5
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 2.6e-22 110.2 343 32.1
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 2.6e-22 110.2 338 32.8
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.0e-21 108.2 332 33.7
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 1.0e-21 108.2 364 31.3
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.2e-21 107.1 315 32.7
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 2.2e-21 107.1 314 33.4
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.0e-21 105.9 339 31.6
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 6.5e-21 105.5 338 32.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.1e-20 104.8 338 30.5
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.1e-20 104.8 259 34.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.9e-20 104.0 337 31.5
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.2e-20 102.1 338 30.2
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 3.6e-19 99.8 60 95.0
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 3.6e-19 99.8 318 34.0
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 3.6e-19 99.8 261 38.3
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 4.6e-19 99.4 324 28.7
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 7.9e-19 98.6 291 32.6
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 1.4e-18 97.8 286 32.9
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 1.8e-18 97.4 316 34.5
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.8e-18 97.4 330 28.8
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 2.3e-18 97.1 325 34.2
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.0e-18 96.7 322 32.9
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.0e-18 96.7 332 36.1
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.0e-18 96.7 324 33.6
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 5.1e-18 95.9 328 31.1
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 5.1e-18 95.9 318 31.8
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 8.8e-18 95.1 333 29.4
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.8e-18 95.1 318 31.1
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.1e-17 94.7 342 32.5
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 1.9e-17 94.0 324 33.6
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 1.3e-16 91.3 359 27.0
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.8e-16 90.1 238 33.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.4e-15 87.0 248 32.3
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 2.4e-15 87.0 287 32.8
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 3.1e-15 86.7 328 34.5
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 5.3e-15 85.9 284 31.3
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.0e-14 84.0 162 39.5
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.0e-14 84.0 276 33.0
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.6e-14 83.6 47 91.5
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 2.6e-14 83.6 261 35.2
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 3.4e-14 83.2 231 32.5
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.5e-14 82.8 143 42.0
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 5.9e-14 82.4 155 41.3
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 7.7e-14 82.0 156 41.0
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.0e-13 81.6 227 32.6
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.0e-13 81.6 301 27.9
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.3e-13 81.3 296 37.2
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-13 81.3 121 45.5
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.3e-13 81.3 50 86.0
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.7e-13 80.9 310 36.5
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.7e-13 80.9 166 39.8
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.7e-13 80.9 287 31.7
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 5.0e-13 79.3 135 45.2
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.5e-13 79.0 310 29.7
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.9e-12 77.4 45 88.9
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 3.2e-12 76.6 286 29.7
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 5.5e-12 75.9 42 92.9
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 5.5e-12 75.9 296 31.4
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 7.2e-12 75.5 366 28.1
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 9.4e-12 75.1 46 84.8
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 7.9e-11 72.0 133 39.8
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 7.9e-11 72.0 40 95.0
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.0e-10 71.6 41 90.2
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.0e-10 71.6 47 78.7
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.0e-10 71.6 221 34.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 1.8e-10 70.9 234 32.1
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 8.8e-10 68.6 309 27.5
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 8.8e-10 68.6 192 36.5
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.1e-09 68.2 132 39.4
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 9.7e-09 65.1 94 47.9
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.8e-08 63.5 171 29.2
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 8.2e-08 62.0 225 36.0
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 8.2e-08 62.0 46 73.9
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.4e-07 61.2 192 30.7
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.8e-07 60.8 196 33.2
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.9e-07 58.9 151 31.8
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 5.9e-06 55.8 237 28.3


User provided reference genes

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