Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p11770 Brassica napus HOM05D005897 ORTHO05D007128 6.1e-111 404.1 191 100.0
BolC3t13648H Brassica oleracea HOM05D005897 ORTHO05D007128 6.1e-111 404.1 191 100.0
A03p10250 Brassica napus HOM05D005897 ORTHO05D007128 7.3e-104 380.6 192 94.8
BraA03t10334Z Brassica rapa HOM05D005897 ORTHO05D007128 2.8e-103 378.6 192 94.3
BcaB01g04771 Brassica carinata HOM05D005897 ORTHO05D007128 8.7e-73 277.3 190 77.4
Sp6g23730 Schrenkiella parvula HOM05D005897 ORTHO05D007128 2.8e-71 272.3 196 74.0
A02p06480 Brassica napus HOM05D005897 ORTHO05D007128 3.1e-70 268.9 191 71.2
BraA02t05593Z Brassica rapa HOM05D005897 ORTHO05D007128 3.1e-70 268.9 191 71.2
Thhalv10014753m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 4.5e-69 265.0 199 71.4
BcaC03g13798 Brassica carinata HOM05D005897 ORTHO05D007128 5.8e-69 264.6 191 70.2
BolC2t07071H Brassica oleracea HOM05D005897 ORTHO05D007128 5.8e-69 264.6 191 70.2
BraA10t44004Z Brassica rapa HOM05D005897 ORTHO05D007128 2.2e-68 262.7 192 70.3
A10p19270 Brassica napus HOM05D005897 ORTHO05D007128 8.4e-68 260.8 192 70.3
BcaB05g22814 Brassica carinata HOM05D005897 ORTHO05D007128 1.6e-66 256.5 192 69.8
AT5G20790 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 8.7e-65 250.8 189 67.7
C09p55420 Brassica napus HOM05D005897 ORTHO05D007128 4.8e-63 245.0 195 69.7
BolC9t58404H Brassica oleracea HOM05D005897 ORTHO05D007128 4.8e-63 245.0 195 69.7
BcaC04g19466 Brassica carinata HOM05D005897 ORTHO05D007128 6.2e-63 244.6 195 69.2
AL6G32310 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 8.1e-63 244.2 215 60.9
BcaB08g36527 Brassica carinata HOM05D005897 ORTHO05D007128 8.1e-63 244.2 192 67.7
Carub.0006s1909 Capsella rubella HOM05D005897 ORTHO05D007128 1.3e-57 226.9 207 61.4
CARHR192060 Cardamine hirsuta HOM05D005897 ORTHO05D007128 8.4e-52 207.6 189 63.0
Aa31LG4G13050 Aethionema arabicum HOM05D005897 ORTHO05D007128 2.9e-44 182.6 189 57.1
AL5G21230 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 2.9e-44 182.6 185 56.2
Sp5g18750 Schrenkiella parvula HOM05D005897 ORTHO05D007128 5.0e-44 181.8 185 55.7
CARHR152530 Cardamine hirsuta HOM05D005897 ORTHO05D007128 8.5e-44 181.0 186 55.4
AT3G43110 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 7.9e-42 174.5 188 53.2
Carub.0005s0898 Capsella rubella HOM05D005897 ORTHO05D007128 1.3e-39 167.2 196 50.0
Thhalv10002680m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 6.3e-39 164.9 188 48.4
Gohir.D05G036900 Gossypium hirsutum HOM05D005897 ORTHO05D007128 5.5e-35 151.8 189 43.9
Gorai.009G037400 Gossypium raimondii HOM05D005897 ORTHO05D007128 2.7e-34 149.4 189 43.4
Gohir.A05G035400 Gossypium hirsutum HOM05D005897 ORTHO05D007128 3.6e-34 149.1 190 43.7
THA.LOC104799609 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 1.0e-33 147.5 211 44.1
COL.COLO4_21221 Corchorus olitorius HOM05D005897 ORTHO05D007128 1.1e-32 144.1 204 42.6
Duzib150G1683 Durio zibethinus HOM05D005897 ORTHO05D007128 1.5e-32 143.7 204 42.6
Haze_26054 Corylus avellana HOM05D005897 ORTHO05D007128 7.4e-32 141.4 191 44.5
Gohir.A06G079100 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.7e-31 140.2 192 43.2
THA.LOC104811289 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 2.8e-31 139.4 198 43.4
Gohir.D06G078500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.8e-30 136.7 197 42.6
Gorai.010G091500 Gossypium raimondii HOM05D005897 ORTHO05D007128 2.4e-30 136.3 197 42.6
Thecc.09G071600 Theobroma cacao HOM05D005897 ORTHO05D007128 3.1e-30 136.0 200 43.0
Duzib168G1262 Durio zibethinus HOM05D005897 ORTHO05D007128 6.9e-30 134.8 191 43.5
Gohir.D07G016500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.2e-29 134.0 186 43.0
Gorai.001G017300 Gossypium raimondii HOM05D005897 ORTHO05D007128 2.6e-29 132.9 186 42.5
Ciclev10024151m.g Citrus clementina HOM05D005897 ORTHO05D007128 3.8e-28 129.0 194 41.2
PGR044G2287 Punica granatum HOM05D005897 ORTHO05D007128 6.5e-28 128.3 205 43.4
FAN26G0251 Fragaria x ananassa HOM05D005897 ORTHO05D007128 8.5e-28 127.9 198 40.9
FAN28G0476 Fragaria x ananassa HOM05D005897 ORTHO05D007128 8.5e-28 127.9 198 40.4
Manes.16G091700 Manihot esculenta HOM05D005897 ORTHO05D007128 1.1e-27 127.5 202 40.6
Cpa.g.sc1772.1 Carica papaya HOM05D005897 ORTHO05D007128 1.4e-27 127.1 185 40.0
Gohir.A07G016700 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.4e-27 127.1 186 40.9
QL11p002200 Quercus lobata HOM05D005897 ORTHO05D007128 1.9e-27 126.7 205 40.5
Dinv42424 Davidia involucrata HOM05D005897 ORTHO05D007128 3.2e-27 125.9 193 44.6
Glyma.15G181800 Glycine max HOM05D005897 ORTHO05D007128 1.2e-26 124.0 190 39.5
Cfa002951 Carpinus fangiana HOM05D005897 ORTHO05D007128 3.6e-26 122.5 201 41.3
FAN26G0677 Fragaria x ananassa HOM05D005897 ORTHO05D007128 6.1e-26 121.7 199 40.7
Nitab4.5_0008755g0010 Nicotiana tabacum HOM05D005897 ORTHO05D007128 6.1e-26 121.7 186 41.4
FAN23G1701 Fragaria x ananassa HOM05D005897 ORTHO05D007128 7.9e-26 121.3 200 40.5
RcHm_v2.0_Chr2g0095761 Rosa chinensis HOM05D005897 ORTHO05D007128 1.8e-25 120.2 191 37.7
FvH4_1g09230 Fragaria vesca HOM05D005897 ORTHO05D007128 3.9e-25 119.0 199 39.7
TWI34G1248 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 3.9e-25 119.0 194 38.1
Ciclev10009511m.g Citrus clementina HOM05D005897 ORTHO05D007128 6.7e-25 118.2 198 36.9
Oeu055332.1 Olea europaea HOM05D005897 ORTHO05D007128 8.8e-25 117.9 204 37.7
Sabra06G0107900 Salix brachista HOM05D005897 ORTHO05D007128 1.1e-24 117.5 198 34.8
CANSAT56G4244 Cannabis sativa HOM05D005897 ORTHO05D007128 1.5e-24 117.1 190 37.4
FAN19G1802 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.5e-24 117.1 199 39.2
TWI32G0373 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 4.4e-24 115.5 184 37.0
Psat1g137480 Pisum sativum HOM05D005897 ORTHO05D007128 7.4e-24 114.8 189 38.1
Prupe.7G193600 Prunus persica HOM05D005897 ORTHO05D007128 7.4e-24 114.8 194 39.7
Peaxi162Scf00191g00103 Petunia axillaris HOM05D005897 ORTHO05D007128 3.7e-23 112.5 193 39.4
CiPaw.03G202200 Carya illinoinensis HOM05D005897 ORTHO05D007128 6.3e-23 111.7 189 36.5
Oeu055333.1 Olea europaea HOM05D005897 ORTHO05D007128 6.3e-23 111.7 200 39.5
VMungo1309G2633 Vigna mungo HOM05D005897 ORTHO05D007128 6.3e-23 111.7 190 38.4
Nitab4.5_0001699g0070 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.1e-22 110.9 194 40.7
CiPaw.04G140700 Carya illinoinensis HOM05D005897 ORTHO05D007128 1.8e-22 110.2 200 38.5
Lj6g0011186 Lotus japonicus HOM05D005897 ORTHO05D007128 3.1e-22 109.4 187 38.0
Manes.03G043500 Manihot esculenta HOM05D005897 ORTHO05D007128 4.1e-22 109.0 197 38.6
Nitab4.5_0001092g0030 Nicotiana tabacum HOM05D005897 ORTHO05D007128 4.1e-22 109.0 217 35.0
Phvul.009G224300 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 4.1e-22 109.0 186 38.2
Nitab4.5_0000400g0090 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.6e-21 107.1 220 33.6
CSS0017580 Camellia sinensis var. sinensis HOM05D005897 ORTHO05D007128 2.6e-21 106.3 185 38.9
Oeu010835.1 Olea europaea HOM05D005897 ORTHO05D007128 4.5e-21 105.5 192 38.5
SalBow6G0024 Salvia bowleyana HOM05D005897 ORTHO05D007128 5.9e-21 105.1 192 35.9
Glyma.09G073050 Glycine max HOM05D005897 ORTHO05D007128 1.7e-20 103.6 193 36.3
Atru.chr7.1754 Acer truncatum HOM05D005897 ORTHO05D007128 3.8e-20 102.4 213 34.3
MD15G1222300 Malus domestica HOM05D005897 ORTHO05D007128 3.8e-20 102.4 207 35.7
Actinidia39626 Actinidia chinensis HOM05D005897 ORTHO05D007128 8.5e-20 101.3 187 38.5
Ca_05224_v3 Cicer arietinum L. HOM05D005897 ORTHO05D007128 1.5e-19 100.5 201 33.8
TAR624G1366 Trochodendron aralioides HOM05D005897 ORTHO05D007128 1.6e-18 97.1 200 37.0
MSTRG.19434 Avicennia marina HOM05D005897 ORTHO05D007128 2.1e-18 96.7 188 35.6
Medtr2g043710 Medicago truncatula HOM05D005897 ORTHO05D007128 2.1e-18 96.7 200 33.0
arahy.Tifrunner.gnm1.ann1.K6A74J Arachis hypogaea HOM05D005897 ORTHO05D007128 3.6e-18 95.9 186 36.6
Migut.J00894 Erythranthe guttata HOM05D005897 ORTHO05D007128 8.0e-18 94.7 201 35.8
Migut.L01590 Erythranthe guttata HOM05D005897 ORTHO05D007128 8.0e-18 94.7 192 39.1
Glyma.13G113000 Glycine max HOM05D005897 ORTHO05D007128 1.8e-17 93.6 182 36.3
Rhsim03G0226100 Rhododendron simsii HOM05D005897 ORTHO05D007128 1.8e-17 93.6 179 36.9
SGA_v2.0_scaffold21G09544 Striga asiatica HOM05D005897 ORTHO05D007128 1.8e-17 93.6 189 34.4
Rhsim05G0003600 Rhododendron simsii HOM05D005897 ORTHO05D007128 2.3e-17 93.2 194 37.6
Nn8g38553 Nelumbo nucifera HOM05D005897 ORTHO05D007128 5.2e-17 92.0 219 30.6
TPR.G4016 Trifolium pratense HOM05D005897 ORTHO05D007128 6.7e-17 91.7 196 32.7
Sopen07g022000 Solanum pennellii HOM05D000392 ORTHO05D002065 1.2e-16 90.9 188 34.0
PGR142G3671 Punica granatum HOM05D005897 ORTHO05D007128 1.5e-16 90.5 189 34.4
Nn6g35653 Nelumbo nucifera HOM05D005897 ORTHO05D007128 1.3e-15 87.4 216 31.0
VMungo1215G2819 Vigna mungo HOM05D005897 ORTHO05D007128 1.3e-15 87.4 187 35.8
Eucgr.C03289 Eucalyptus grandis HOM05D005897 ORTHO05D007128 3.7e-15 85.9 190 35.8
Potri.006G137700 Populus trichocarpa HOM05D005897 ORTHO05D007128 3.7e-15 85.9 198 30.3
TAR383G0419 Trochodendron aralioides HOM05D005897 ORTHO05D007128 4.8e-15 85.5 187 33.7
Lj4g0017959 Lotus japonicus HOM05D005897 ORTHO05D007128 1.4e-14 84.0 187 33.7
AUR62028279 Chenopodium quinoa HOM05D005897 ORTHO05D007128 1.8e-14 83.6 188 35.6
Phvul.003G128400 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 7.0e-14 81.6 192 34.9
Glyma.17G046700 Glycine max HOM05D005897 ORTHO05D007128 2.7e-13 79.7 182 35.2
MD02G1099300 Malus domestica HOM05D005897 ORTHO05D007128 3.5e-13 79.3 203 32.0
unitig_22.g5071 Utricularia gibba HOM05D005897 ORTHO05D007128 1.0e-12 77.8 189 30.2
Actinidia29946 Actinidia chinensis HOM05D005897 ORTHO05D007128 1.3e-12 77.4 193 33.7
Medtr4g124850 Medicago truncatula HOM05D005897 ORTHO05D007128 3.8e-12 75.9 196 33.2
Lalb_Chr11g0074041 Lupinus albus HOM05D005897 ORTHO05D007128 1.1e-11 74.3 195 31.8
Lsat_1_v5_gn_5_139320 Lactuca sativa HOM05D005897 ORTHO05D007128 5.5e-11 72.0 199 31.2
Dinv25518 Davidia involucrata HOM05D005897 ORTHO05D007128 1.2e-10 70.9 87 46.0
PGSC0003DMG400013552 Solanum tuberosum HOM05D005897 ORTHO05D007128 4.7e-10 68.9 187 30.5
TPR.G11456 Trifolium pratense HOM05D005897 ORTHO05D007128 3.0e-09 66.2 192 28.6
Psat4g067280 Pisum sativum HOM05D005897 ORTHO05D007128 4.0e-09 65.9 185 33.0
ATR0681G234 Amborella trichopoda HOM05D005897 ORTHO05D007128 7.5e-08 61.6 216 28.7
Os09g0438100 Oryza sativa ssp. japonica HOM05D041184 ORTHO05D037194 4.8e-07 58.9 211 28.4
Actinidia38489 Actinidia chinensis HOM05D005897 ORTHO05D007128 8.3e-07 58.2 48 56.2
vmacro15871 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 1.8e-06 57.0 44 56.8
DCAR_011924 Daucus carota HOM05D005897 ORTHO05D007128 5.4e-06 55.5 166 29.5


User provided reference genes

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