Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p11710 Brassica napus HOM05D003960 ORTHO05D004297 4.9e-79 297.7 152 100.0
BolC3t13642H Brassica oleracea HOM05D003960 ORTHO05D004297 9.6e-67 256.9 134 100.0
A02p06410 Brassica napus HOM05D003960 ORTHO05D004297 1.0e-60 236.9 138 91.3
BraA02t05586Z Brassica rapa HOM05D003960 ORTHO05D004297 1.0e-60 236.9 138 91.3
BcaB05g22823 Brassica carinata HOM05D003960 ORTHO05D004297 1.5e-59 233.0 138 89.9
BcaB05g22824 Brassica carinata HOM05D003960 ORTHO05D004297 1.5e-59 233.0 138 89.9
Thhalv10015467m.g Eutrema salsugineum HOM05D003960 ORTHO05D004297 5.7e-59 231.1 138 88.4
Sp6g23830 Schrenkiella parvula HOM05D003960 ORTHO05D004297 1.4e-57 226.5 136 88.2
BcaB08g36516 Brassica carinata HOM05D003960 ORTHO05D004297 1.8e-57 226.1 139 87.8
A10p19370 Brassica napus HOM05D003960 ORTHO05D004297 4.1e-57 224.9 139 87.1
BraA10t44014Z Brassica rapa HOM05D003960 ORTHO05D004297 4.1e-57 224.9 139 87.1
C09p55580 Brassica napus HOM05D003960 ORTHO05D004297 2.6e-56 222.2 139 85.6
BolC9t58421H Brassica oleracea HOM05D003960 ORTHO05D004297 2.6e-56 222.2 139 85.6
BcaC04g19455 Brassica carinata HOM05D003960 ORTHO05D004297 4.5e-56 221.5 139 84.9
Carub.0006s1899 Capsella rubella HOM05D003960 ORTHO05D004297 4.2e-54 214.9 140 81.4
BcaC03g13784 Brassica carinata HOM05D003960 ORTHO05D004297 2.1e-53 212.6 138 84.8
CARHR192160 Cardamine hirsuta HOM05D003960 ORTHO05D004297 2.3e-52 209.1 139 80.6
Aa31LG1G14040 Aethionema arabicum HOM05D003960 ORTHO05D004297 3.9e-52 208.4 138 79.7
AL6G32200 Arabidopsis lyrata HOM05D003960 ORTHO05D004297 1.4e-49 199.9 140 77.9
AT5G20650 Arabidopsis thaliana HOM05D003960 ORTHO05D004297 2.4e-49 199.1 141 77.3
THA.LOC104810995 Tarenaya hassleriana HOM05D003960 ORTHO05D004297 1.6e-45 186.4 141 71.6
Gohir.A06G077200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.6e-37 159.8 138 61.6
Gorai.010G089200 Gossypium raimondii HOM05D003960 ORTHO05D004297 2.7e-37 159.1 138 61.6
Gohir.D06G076200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.6e-37 158.7 138 60.9
COL.COLO4_18085 Corchorus olitorius HOM05D003960 ORTHO05D004297 1.0e-36 157.1 138 62.3
Manes.03G041100 Manihot esculenta HOM05D003960 ORTHO05D004297 1.5e-35 153.3 138 59.4
Potri.006G140700 Populus trichocarpa HOM05D003960 ORTHO05D004297 8.2e-34 147.5 138 58.0
Duzib187G1941 Durio zibethinus HOM05D003960 ORTHO05D004297 2.4e-33 146.0 138 58.0
HanXRQChr03g0067151 Helianthus annuus HOM05D003960 ORTHO05D004297 2.4e-33 146.0 145 57.9
Nn8g38616 Nelumbo nucifera HOM05D003960 ORTHO05D004297 2.4e-33 146.0 140 61.4
SGA_v2.0_scaffold169G38715 Striga asiatica HOM05D003960 ORTHO05D004297 4.1e-33 145.2 140 55.7
Ciclev10009830m.g Citrus clementina HOM05D003960 ORTHO05D004297 5.3e-33 144.8 140 55.0
PGSC0003DMG400013653 Solanum tuberosum HOM05D003960 ORTHO05D004297 5.3e-33 144.8 145 52.4
Duzib150G0920 Durio zibethinus HOM05D003960 ORTHO05D004297 7.0e-33 144.4 139 58.3
Thecc.09G075400 Theobroma cacao HOM05D003960 ORTHO05D004297 7.0e-33 144.4 138 56.5
Sopen02g026730 Solanum pennellii HOM05D003960 ORTHO05D004297 1.2e-32 143.7 145 52.4
Solyc02g082080.1 Solanum lycopersicum HOM05D003960 ORTHO05D004297 1.6e-32 143.3 145 52.4
vmacro04769 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 3.5e-32 142.1 148 56.8
MELO3C011494.2 Cucumis melo HOM05D003960 ORTHO05D004297 4.5e-32 141.7 140 55.7
Sabra06G0110000 Salix brachista HOM05D003960 ORTHO05D004297 4.5e-32 141.7 133 57.1
Gohir.A13G190100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 5.9e-32 141.4 139 56.8
TWI63G0819 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.9e-32 141.4 141 56.7
MSTRG.25994 Avicennia marina HOM05D003960 ORTHO05D004297 7.7e-32 141.0 143 56.6
Cc08_g01000 Coffea canephora HOM05D003960 ORTHO05D004297 7.7e-32 141.0 151 53.0
TAR667G0002 Trochodendron aralioides HOM05D003960 ORTHO05D004297 7.7e-32 141.0 141 54.6
Gohir.D13G196345 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.0e-31 140.6 139 59.0
Lj7P209T18 Lonicera japonica HOM05D003960 ORTHO05D004297 1.0e-31 140.6 146 55.5
Gorai.013G223700 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.7e-31 139.8 139 56.8
Atru.chr7.1719 Acer truncatum HOM05D003960 ORTHO05D004297 2.9e-31 139.0 141 55.3
Sed0008240 Sechium edule HOM05D003960 ORTHO05D004297 3.8e-31 138.7 140 56.4
CsaV3_6G031870 Cucumis sativus L. HOM05D003960 ORTHO05D004297 5.0e-31 138.3 140 55.0
Ca_13094_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 6.5e-31 137.9 139 57.6
ClCG08G009750 Citrullus lanatus HOM05D003960 ORTHO05D004297 6.5e-31 137.9 140 53.6
FvH4_2g30830 Fragaria vesca HOM05D003960 ORTHO05D004297 8.5e-31 137.5 139 55.4
FAN24G1040 Fragaria x ananassa HOM05D003960 ORTHO05D004297 8.5e-31 137.5 139 55.4
Cfa015757 Carpinus fangiana HOM05D003960 ORTHO05D004297 1.5e-30 136.7 144 53.5
DCAR_001242 Daucus carota HOM05D003960 ORTHO05D004297 1.5e-30 136.7 140 53.6
unitig_32.g11516 Utricularia gibba HOM05D003960 ORTHO05D004297 1.9e-30 136.3 138 55.1
CAN.G65.51 Capsicum annuum HOM05D003960 ORTHO05D004297 2.5e-30 136.0 148 52.7
Oeu024207.1 Olea europaea HOM05D003960 ORTHO05D004297 2.5e-30 136.0 144 52.8
Prupe.1G402400 Prunus persica HOM05D003960 ORTHO05D004297 2.5e-30 136.0 144 54.9
SGA_v2.0_scaffold64G21904 Striga asiatica HOM05D003960 ORTHO05D004297 3.2e-30 135.6 143 53.8
MSTRG.1711 Avicennia marina HOM05D003960 ORTHO05D004297 4.2e-30 135.2 146 52.7
FAN20G3158 Fragaria x ananassa HOM05D003960 ORTHO05D004297 4.2e-30 135.2 142 54.2
Lsat_1_v5_gn_8_70441 Lactuca sativa HOM05D003960 ORTHO05D004297 4.2e-30 135.2 138 53.6
Psat6g023040 Pisum sativum HOM05D003960 ORTHO05D004297 4.2e-30 135.2 138 55.8
Aqoxy7G04097 Aquilegia oxysepala HOM05D003960 ORTHO05D004297 7.2e-30 134.4 140 50.7
Glyma.14G107100 Glycine max HOM05D003960 ORTHO05D004297 7.2e-30 134.4 143 55.9
Oeu018026.1 Olea europaea HOM05D003960 ORTHO05D004297 7.2e-30 134.4 150 53.3
FAN27G1345 Fragaria x ananassa HOM05D003960 ORTHO05D004297 9.4e-30 134.0 142 54.2
Glyma.17G219400 Glycine max HOM05D003960 ORTHO05D004297 9.4e-30 134.0 145 55.2
FAN15G2682 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.2e-29 133.7 142 53.5
MD15G1048000 Malus domestica HOM05D003960 ORTHO05D004297 1.6e-29 133.3 147 54.4
PSO135G0474 Papaver somniferum HOM05D003960 ORTHO05D004297 1.6e-29 133.3 140 54.3
Migut.A00060 Erythranthe guttata HOM05D003960 ORTHO05D004297 3.6e-29 132.1 144 52.8
Atru.chr7.1831 Acer truncatum HOM05D003960 ORTHO05D004297 4.7e-29 131.7 141 52.5
Lsat_1_v5_gn_7_58180 Lactuca sativa HOM05D003960 ORTHO05D004297 4.7e-29 131.7 144 52.8
PSO104G0019 Papaver somniferum HOM05D003960 ORTHO05D004297 4.7e-29 131.7 143 53.8
Nitab4.5_0009849g0010 Nicotiana tabacum HOM05D003960 ORTHO05D004297 6.1e-29 131.3 141 51.1
PGR044G2188 Punica granatum HOM05D003960 ORTHO05D004297 8.0e-29 131.0 144 53.5
Medtr3g105330 Medicago truncatula HOM05D003960 ORTHO05D004297 1.4e-28 130.2 142 52.1
SalBow4G1627 Salvia bowleyana HOM05D003960 ORTHO05D004297 1.8e-28 129.8 141 53.9
GSVIVG01015065001 Vitis vinifera HOM05D003960 ORTHO05D004297 2.3e-28 129.4 143 53.1
RcHm_v2.0_Chr6g0312031 Rosa chinensis HOM05D003960 ORTHO05D004297 3.0e-28 129.0 144 51.4
Sc06g0000100 Simmondsia chinensis HOM05D003960 ORTHO05D004297 3.0e-28 129.0 143 52.4
MD08G1044900 Malus domestica HOM05D003960 ORTHO05D004297 5.2e-28 128.3 145 53.1
Medtr1g015000 Medicago truncatula HOM05D003960 ORTHO05D004297 5.2e-28 128.3 140 54.3
TPR.G3570 Trifolium pratense HOM05D003960 ORTHO05D004297 5.2e-28 128.3 142 52.8
Psat5g033920 Pisum sativum HOM05D003960 ORTHO05D004297 6.8e-28 127.9 142 52.1
MSTRG.14089 Avicennia marina HOM05D003960 ORTHO05D004297 8.8e-28 127.5 139 47.5
Sabra06G0169100 Salix brachista HOM05D003960 ORTHO05D004297 1.5e-27 126.7 146 49.3
TPR.G38913 Trifolium pratense HOM05D003960 ORTHO05D004297 1.5e-27 126.7 139 52.5
CANSAT25G0735 Cannabis sativa HOM05D003960 ORTHO05D004297 2.0e-27 126.3 144 50.7
Lalb_Chr23g0268031 Lupinus albus HOM05D003960 ORTHO05D004297 2.0e-27 126.3 139 47.5
Lj1g0025356 Lotus japonicus HOM05D003960 ORTHO05D004297 2.6e-27 125.9 142 50.7
Nn2g15194 Nelumbo nucifera HOM05D003960 ORTHO05D004297 3.4e-27 125.6 141 51.1
PSO724G1087 Papaver somniferum HOM05D003960 ORTHO05D004297 3.4e-27 125.6 141 52.5
Dinv42402 Davidia involucrata HOM05D003960 ORTHO05D004297 4.4e-27 125.2 140 52.1
TWI34G1946 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.7e-27 124.8 143 47.6
TAR624G1083 Trochodendron aralioides HOM05D003960 ORTHO05D004297 5.7e-27 124.8 134 53.0
BraA03t10329Z Brassica rapa HOM05D003960 ORTHO05D004297 7.5e-27 124.4 80 88.8
HPP92_016237 Vanilla planifolia HOM05D003960 ORTHO05D004297 7.5e-27 124.4 139 51.1
CiPaw.16G067200 Carya illinoinensis HOM05D003960 ORTHO05D004297 1.3e-26 123.6 140 49.3
RhsimUnG0073900 Rhododendron simsii HOM05D003960 ORTHO05D004297 1.3e-26 123.6 143 50.3
SEGI_35471 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 1.3e-26 123.6 138 50.0
Potri.006G219200 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.7e-26 123.2 145 47.6
Ca_15825_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 2.2e-26 122.9 142 50.7
Ca_28263_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 2.2e-26 122.9 142 50.7
Hma1.2p1_0179F.1_g079470 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 2.2e-26 122.9 147 52.4
AUR62028262 Chenopodium quinoa HOM05D003960 ORTHO05D004297 2.8e-26 122.5 141 52.5
Zm00001eb314090 Zea mays HOM05D003960 ORTHO05D004297 3.7e-26 122.1 150 49.3
CiPaw.15G090800 Carya illinoinensis HOM05D003960 ORTHO05D004297 4.8e-26 121.7 140 50.7
MD08G1045600 Malus domestica HOM05D003960 ORTHO05D004297 4.8e-26 121.7 145 50.3
Os09g0440700 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 8.3e-26 120.9 144 49.3
ECA236G3206 Erigeron canadensis HOM05D003960 ORTHO05D004297 1.1e-25 120.6 141 49.6
CiPaw.05G156700 Carya illinoinensis HOM05D003960 ORTHO05D004297 1.4e-25 120.2 140 50.7
CiPaw.05G157200 Carya illinoinensis HOM05D003960 ORTHO05D004297 1.4e-25 120.2 140 50.7
TWI32G1339 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 1.4e-25 120.2 144 47.2
Manes.16G086700 Manihot esculenta HOM05D003960 ORTHO05D004297 2.4e-25 119.4 143 50.3
Zm00001eb100190 Zea mays HOM05D003960 ORTHO05D004297 2.4e-25 119.4 145 48.3
Lj5g0010758 Lotus japonicus HOM05D003960 ORTHO05D004297 5.4e-25 118.2 141 48.9
Eucgr.J01772 Eucalyptus grandis HOM05D003960 ORTHO05D004297 7.0e-25 117.9 147 49.0
Glyma.06G057400 Glycine max HOM05D003960 ORTHO05D004297 9.1e-25 117.5 142 46.5
COL.COLO4_21157 Corchorus olitorius HOM05D003960 ORTHO05D004297 1.2e-24 117.1 147 50.3
Duzib150G1216 Durio zibethinus HOM05D003960 ORTHO05D004297 2.0e-24 116.3 147 50.3
VMungo1309G2154 Vigna mungo HOM05D003960 ORTHO05D004297 2.7e-24 115.9 142 45.1
Cfa002978 Carpinus fangiana HOM05D003960 ORTHO05D004297 3.5e-24 115.5 128 51.6
Gohir.A13G188100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.5e-24 115.5 138 48.6
Gorai.013G221100 Gossypium raimondii HOM05D003960 ORTHO05D004297 3.5e-24 115.5 138 48.6
QL11p001038 Quercus lobata HOM05D003960 ORTHO05D004297 3.5e-24 115.5 127 52.0
Gohir.D13G195000 Gossypium hirsutum HOM05D003960 ORTHO05D004297 4.5e-24 115.2 135 51.1
Glyma.04G057000 Glycine max HOM05D003960 ORTHO05D004297 5.9e-24 114.8 142 45.1
VMungo1309G0846 Vigna mungo HOM05D003960 ORTHO05D004297 1.0e-23 114.0 142 45.1
Phvul.009G083400 Phaseolus vulgaris HOM05D003960 ORTHO05D004297 1.7e-23 113.2 142 45.1
CSS0013785 Camellia sinensis var. sinensis HOM05D003960 ORTHO05D004297 2.2e-23 112.8 156 44.2
PGR142G3331 Punica granatum HOM05D003960 ORTHO05D004297 2.2e-23 112.8 153 47.7
Duzib187G0159 Durio zibethinus HOM05D003960 ORTHO05D004297 3.8e-23 112.1 147 46.3
Thecc.09G065300 Theobroma cacao HOM05D003960 ORTHO05D004297 3.8e-23 112.1 147 49.0
Eucgr.B00068 Eucalyptus grandis HOM05D003960 ORTHO05D004297 5.0e-23 111.7 134 47.8
Gorai.001G019400 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.9e-22 109.8 142 46.5
vmacro17132 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 1.9e-22 109.8 147 46.3
SHI27998 Sapria himalayana HOM05D003960 ORTHO05D004297 2.5e-22 109.4 141 44.7
ATR0598G332 Amborella trichopoda HOM05D003960 ORTHO05D004297 4.2e-22 108.6 145 46.2
Gohir.D07G018700 Gossypium hirsutum HOM05D003960 ORTHO05D004297 5.5e-22 108.2 142 45.8
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 1.2e-21 107.1 138 46.4
CiPaw.03G205100 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.8e-21 105.9 128 48.4
Gohir.A07G018900 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.8e-21 105.9 144 45.8
CANSAT56G3391 Cannabis sativa HOM05D003960 ORTHO05D004297 2.3e-20 102.8 138 45.7
Eucgr.K01930 Eucalyptus grandis HOM05D003960 ORTHO05D004297 1.7e-18 96.7 135 44.4
HanXRQChr05g0136461 Helianthus annuus HOM05D003960 ORTHO05D004297 1.7e-18 96.7 141 42.6
Eucgr.L03350 Eucalyptus grandis HOM05D003960 ORTHO05D004297 3.7e-18 95.5 139 43.9
Actinidia39652 Actinidia chinensis HOM05D003960 ORTHO05D004297 4.9e-18 95.1 139 44.6
Os08g0455900 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 8.3e-18 94.4 173 38.7
SMO174G0135 Selaginella moellendorffii HOM05D003960 ORTHO05D004297 7.0e-17 91.3 124 48.4
Peaxi162Scf00486g00012 Petunia axillaris HOM05D003960 ORTHO05D004297 1.2e-16 90.5 107 51.4
PSO421G0342 Papaver somniferum HOM05D003960 ORTHO05D004297 3.5e-16 89.0 107 51.4
MBI19_g09927_MAGBIO Magnolia biondii HOM05D003960 ORTHO05D004297 2.3e-15 86.3 91 53.8
Pp3c7_1360 Physcomitrium patens HOM05D003960 ORTHO05D004297 4.3e-14 82.0 132 40.2
AagrBONN_evm.TU.Sc2ySwM_228.672 Anthoceros agrestis HOM05D003960 ORTHO05D004297 2.1e-13 79.7 145 37.9
EL10Ac8g19048 Beta vulgaris HOM05D003960 ORTHO05D004297 2.1e-13 79.7 97 48.5
GSVIVG01035488001 Vitis vinifera HOM05D000633 ORTHO05D000477 8.0e-13 77.8 140 37.1
Rhsim05G0006800 Rhododendron simsii HOM05D003960 ORTHO05D004297 1.4e-12 77.0 146 39.7
Mapoly0011s0109 Marchantia polymorpha HOM05D003960 ORTHO05D004297 5.2e-12 75.1 132 40.9
A03p10190 Brassica napus HOM05D003960 ORTHO05D004297 6.8e-12 74.7 45 86.7
SEGI_26542 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 1.2e-11 73.9 123 40.7
AUR62025257 Chenopodium quinoa HOM05D003960 ORTHO05D004297 1.5e-11 73.6 105 48.6
HanXRQChr13g0407981 Helianthus annuus HOM05D003960 ORTHO05D004297 2.0e-11 73.2 59 66.1
Eucgr.C03322 Eucalyptus grandis HOM05D003960 ORTHO05D004297 1.1e-09 67.4 50 56.0
Zm00001eb068890 Zea mays HOM05D000032 ORTHO05D004297 2.4e-09 66.2 113 41.6
HanXRQChr06g0171901 Helianthus annuus HOM05D003960 ORTHO05D004297 3.2e-09 65.9 50 54.0
Mapoly0013s0019 Marchantia polymorpha HOM05D001242 ORTHO05D004297 3.2e-09 65.9 124 36.3
SMO307G0071 Selaginella moellendorffii HOM05D001242 ORTHO05D004297 1.0e-07 60.8 127 33.9
Nitab4.5_0003159g0080 Nicotiana tabacum HOM05D003960 ORTHO05D004297 5.0e-07 58.5 115 36.5
SMO001G0023 Selaginella moellendorffii HOM05D001242 ORTHO05D004297 5.0e-07 58.5 121 34.7
HPP92_016210 Vanilla planifolia HOM05D003960 ORTHO05D004297 1.1e-06 57.4 42 59.5


User provided reference genes

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