Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-98 362.8 239 100.0
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 4.1e-96 355.1 239 98.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.2e-89 332.8 237 93.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.2e-89 332.8 237 93.7
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-67 260.4 247 74.1
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 6.8e-67 258.1 254 76.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 5.8e-66 255.0 260 71.2
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-60 236.1 141 80.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.6e-60 235.7 237 72.2
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.4e-59 233.8 222 73.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-57 227.3 141 79.4
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-57 227.3 141 79.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.2e-56 222.6 222 73.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.6e-55 220.3 226 65.0
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 6.0e-55 218.4 210 65.2
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 6.6e-54 214.9 109 94.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.4e-51 206.5 141 77.3
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.2e-49 199.9 128 75.8
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.4e-43 179.9 123 77.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.5e-42 177.2 125 65.6
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-42 177.2 234 50.0
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.9e-42 174.5 120 70.8
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.7e-41 173.7 114 67.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 8.4e-41 171.4 120 65.0
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.2e-40 169.1 120 65.8
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.7e-39 166.4 122 64.8
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 3.5e-39 166.0 135 58.5
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.0e-39 165.2 112 64.3
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.0e-38 164.5 118 64.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.0e-38 164.5 123 65.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-38 163.7 115 67.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-38 163.7 115 67.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 2.3e-38 163.3 116 69.0
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.1e-38 162.2 114 65.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.5e-37 160.6 113 65.5
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.5e-37 159.8 114 65.8
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 4.3e-37 159.1 122 61.5
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 7.3e-37 158.3 121 63.6
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 7.3e-37 158.3 114 65.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.6e-36 157.1 126 61.1
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.6e-36 157.1 124 63.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.6e-36 157.1 127 62.2
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.2e-36 155.2 116 63.8
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.2e-36 155.2 125 60.8
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.2e-36 155.2 122 65.6
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.1e-35 154.5 122 60.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.8e-35 153.7 124 62.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.1e-35 152.9 122 62.3
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.3e-35 152.1 114 64.9
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.2e-34 151.0 122 63.9
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.2e-34 151.0 105 67.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.4e-34 149.4 110 63.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.4e-34 149.4 128 60.2
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.5e-34 149.1 114 59.6
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.5e-34 149.1 114 63.2
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.5e-34 149.1 114 62.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 5.8e-34 148.7 117 61.5
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.3e-33 147.5 126 61.1
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.8e-33 146.0 115 65.2
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.9e-32 143.7 118 60.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.4e-32 143.3 123 57.7
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 3.2e-32 142.9 100 67.0
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.3e-32 141.4 98 65.3
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.3e-32 141.4 114 60.5
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.3e-32 141.4 114 60.5
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.2e-31 141.0 92 67.4
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.6e-31 140.6 109 61.5
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.7e-31 139.8 89 74.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.0e-31 138.7 92 69.6
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 6.0e-31 138.7 120 59.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.0e-30 137.9 93 68.8
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 6.7e-30 135.2 127 55.1
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 8.7e-30 134.8 113 57.5
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-29 134.0 114 56.1
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.5e-29 134.0 107 59.8
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.9e-29 133.7 123 56.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.5e-29 133.3 114 60.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.5e-29 133.3 115 56.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.5e-29 133.3 122 59.8
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 3.3e-29 132.9 115 57.4
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 5.6e-29 132.1 88 69.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 7.4e-29 131.7 117 55.6
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.3e-28 131.0 83 73.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.1e-28 130.2 112 56.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.1e-28 130.2 88 67.0
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 3.7e-28 129.4 113 56.6
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 8.1e-28 128.3 92 65.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 3.1e-27 126.3 82 67.1
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 3.1e-27 126.3 112 53.6
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 9.0e-27 124.8 80 67.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.2e-26 124.4 116 53.4
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.5e-26 124.0 104 59.6
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.5e-26 124.0 131 51.9
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.5e-26 122.5 70 82.9
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.3e-25 120.9 82 67.1
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.3e-25 120.9 112 56.2
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.7e-25 120.6 120 54.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 6.4e-25 118.6 75 77.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 8.4e-25 118.2 115 49.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.9e-24 117.1 91 62.6
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 3.2e-24 116.3 83 68.7
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 4.2e-24 115.9 91 61.5
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.6e-23 114.0 67 77.6
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.1e-23 113.6 73 75.3
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-22 111.3 128 46.9
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.8e-22 110.5 63 74.6
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.3e-22 110.2 96 58.3
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.5e-21 107.5 115 53.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.9e-21 107.1 80 57.5
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.6e-20 104.0 111 45.9
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.8e-20 103.2 79 67.1
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.8e-20 103.2 67 73.1
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 3.7e-20 102.8 122 47.5
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.1e-19 101.3 144 45.1
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-19 100.1 61 86.9
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-18 97.4 138 39.1
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.5e-18 97.4 120 44.2
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.5e-18 97.4 124 42.7
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-18 96.7 63 74.6
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 4.5e-18 95.9 103 46.6
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.8e-18 95.5 94 51.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 5.8e-18 95.5 94 51.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.9e-17 93.2 109 47.7
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.8e-17 92.8 93 47.3
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.8e-17 92.8 115 44.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 6.5e-17 92.0 57 71.9
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 6.5e-17 92.0 111 45.9
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 8.4e-17 91.7 114 48.2
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 8.4e-17 91.7 81 53.1
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.4e-16 90.9 82 50.0
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.5e-16 90.1 61 77.0
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 2.5e-16 90.1 51 76.5
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 4.2e-16 89.4 59 72.9
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 7.1e-16 88.6 84 57.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 2.7e-15 86.7 95 46.3
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 3.5e-15 86.3 131 43.5
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 4.6e-15 85.9 77 54.5
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 6.0e-15 85.5 96 45.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.9e-14 82.8 59 72.9
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 6.7e-14 82.0 134 39.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.1e-13 81.3 117 37.6
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.5e-13 80.9 140 37.1
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.9e-13 80.5 126 38.9
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.5e-13 80.1 55 69.1
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.5e-13 80.1 66 57.6
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.5e-13 80.1 155 34.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.5e-13 80.1 93 39.8
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 8.2e-12 75.1 77 50.6
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.8e-11 73.9 83 44.6
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 3.1e-11 73.2 82 45.1
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.3e-11 72.4 45 82.2
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 9.0e-11 71.6 43 81.4
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.2e-10 71.2 44 84.1
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.2e-10 71.2 42 85.7
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.5e-10 70.9 82 45.1
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.5e-10 70.9 52 69.2
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.5e-10 70.9 59 62.7
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.6e-10 70.1 67 55.2
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.6e-10 70.1 37 86.5
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.5e-10 69.3 50 70.0
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.9e-10 68.9 35 91.4
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.0e-09 68.2 49 65.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.3e-09 67.8 121 38.0
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.3e-09 67.8 46 69.6
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.7e-09 67.4 35 88.6
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 8.5e-09 65.1 125 36.8
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 8.5e-09 65.1 78 39.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.9e-08 63.9 37 78.4
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.9e-08 63.9 62 50.0
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.6e-07 59.3 58 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 5.1e-06 55.8 86 33.7
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.1e-06 55.8 40 65.0
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 8.8e-06 55.1 27 92.6


User provided reference genes

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