Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.8e-134 482.6 257 100.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.8e-134 482.6 257 100.0
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.3e-134 481.1 257 99.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-133 479.9 257 99.2
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 5.5e-131 471.1 258 98.1
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 7.5e-112 407.5 262 83.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.6e-109 399.8 257 86.4
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 7.0e-102 374.4 252 80.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.8e-98 362.5 258 79.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.6e-98 362.1 251 78.1
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.7e-93 345.9 258 79.1
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.5e-85 318.9 260 65.0
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 6.0e-85 318.2 199 86.4
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.0e-84 315.8 260 64.6
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 6.6e-84 314.7 259 65.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.8e-82 309.3 262 62.2
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.8e-82 309.3 256 66.8
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.5e-80 303.5 200 82.5
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 6.4e-79 298.1 272 66.5
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-74 283.9 271 63.8
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.1e-74 283.1 259 59.1
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.8e-73 280.0 260 60.4
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.3e-73 279.6 272 63.6
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.6e-72 276.2 265 64.5
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.4e-72 275.4 264 65.2
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 5.8e-72 275.0 265 63.0
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.2e-70 269.2 266 63.9
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.1e-67 260.8 271 61.6
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 5.6e-67 258.5 257 54.9
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 5.6e-67 258.5 262 55.0
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 260 54.6
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 2.8e-66 256.1 256 53.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.8e-65 253.4 259 55.6
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 6.9e-65 251.5 259 53.7
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 6.9e-65 251.5 265 56.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.2e-64 250.8 264 54.5
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.5e-64 250.4 224 59.4
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.0e-64 250.0 257 55.3
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 9.9e-64 247.7 260 53.8
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 9.9e-64 247.7 263 52.5
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 2.2e-63 246.5 257 54.5
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 6.4e-63 245.0 245 55.5
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.4e-62 243.0 269 52.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 4.2e-62 242.3 259 53.3
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 7.1e-62 241.5 263 53.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 9.3e-62 241.1 260 54.6
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.6e-61 240.4 259 52.5
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 7.8e-61 238.0 268 52.2
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.3e-60 237.3 274 51.5
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.0e-60 236.1 258 54.3
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 5.1e-60 235.3 257 51.8
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.1e-59 234.2 246 52.4
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.1e-59 234.2 252 53.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.9e-59 233.4 259 51.7
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.5e-59 233.0 260 51.5
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.5e-59 233.0 257 54.9
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.5e-59 233.0 261 52.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.3e-59 232.6 237 54.9
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 4.3e-59 232.3 254 51.6
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 5.6e-59 231.9 262 50.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 5.6e-59 231.9 260 51.5
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.6e-59 231.9 258 53.5
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 7.3e-59 231.5 258 53.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 9.6e-59 231.1 246 52.0
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.8e-58 229.6 250 52.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 4.8e-58 228.8 264 50.0
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.2e-58 228.4 250 51.2
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.2e-58 228.4 259 56.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 8.1e-58 228.0 259 56.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 8.1e-58 228.0 236 53.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.4e-57 227.3 252 51.2
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.8e-57 226.9 246 51.2
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.8e-57 226.9 256 50.4
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 3.1e-57 226.1 261 55.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.0e-57 225.7 247 53.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 9.0e-57 224.6 286 51.4
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-56 224.2 256 50.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.2e-56 224.2 276 47.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.2e-56 224.2 250 51.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.2e-56 224.2 266 48.5
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.2e-56 224.2 272 53.3
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.6e-56 223.0 265 50.2
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.6e-56 223.0 259 49.4
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.4e-56 222.6 217 55.8
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 3.4e-56 222.6 248 50.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.5e-56 222.2 229 54.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.7e-55 220.3 259 49.0
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.2e-55 219.9 284 48.2
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.2e-55 219.9 237 51.1
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.8e-55 219.2 287 48.1
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.9e-55 218.8 258 53.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.1e-54 217.6 284 45.1
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 3.2e-54 216.1 250 50.8
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.2e-54 215.7 211 54.5
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.2e-54 215.7 252 48.8
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 7.1e-54 214.9 232 51.7
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.7e-53 213.0 275 46.2
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.5e-53 212.6 244 53.3
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.5e-53 212.6 244 53.3
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 7.9e-53 211.5 232 51.3
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.8e-52 210.3 264 48.5
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 2.3e-52 209.9 225 51.1
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 5.1e-52 208.8 270 48.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 5.1e-52 208.8 226 53.1
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.9e-51 206.8 255 49.0
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.9e-51 206.8 270 54.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.9e-51 206.8 280 47.5
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 9.6e-51 204.5 196 55.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 2.1e-50 203.4 274 44.5
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.8e-50 202.2 263 46.0
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 4.8e-50 202.2 308 47.4
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.6e-48 196.4 192 54.2
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 5.8e-48 195.3 232 49.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-47 194.1 246 47.2
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.2e-47 193.4 244 45.9
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 2.9e-47 193.0 214 49.5
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 8.4e-47 191.4 200 49.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.9e-46 190.3 266 46.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.7e-45 186.4 197 53.8
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.5e-43 179.9 193 54.9
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-42 177.6 266 44.0
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.3e-42 177.6 239 43.9
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.7e-42 176.0 194 54.1
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.1e-41 174.5 150 56.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.8e-41 173.7 262 46.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.0e-41 172.6 192 52.6
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 6.9e-41 171.8 146 53.4
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.0e-40 170.2 144 57.6
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.6e-40 169.9 187 50.8
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.0e-39 167.9 268 46.3
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.9e-39 166.4 209 45.0
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 4.9e-39 165.6 155 52.9
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.5e-39 165.2 194 46.4
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 6.0e-37 158.7 114 62.3
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.3e-35 152.9 188 48.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.9e-33 145.2 188 46.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 2.2e-31 140.2 190 42.6
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.1e-30 137.9 205 40.5
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 9.3e-30 134.8 150 53.3
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.1e-29 132.1 123 55.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-27 127.1 93 63.4
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 7.4e-27 125.2 98 56.1
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-25 121.3 85 62.4
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 3.1e-25 119.8 150 50.0
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.5e-24 117.5 151 51.0
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 3.4e-24 116.3 166 38.6
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.0e-23 114.8 68 79.4
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.9e-20 102.8 98 54.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 6.7e-20 102.1 150 48.0
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 8.8e-20 101.7 151 45.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 3.3e-19 99.8 164 42.1
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 4.1e-17 92.8 145 45.5
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.1e-17 92.8 166 41.6
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 5.3e-17 92.4 93 46.2
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 6.9e-17 92.0 161 42.9
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 6.9e-17 92.0 141 48.2
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.2e-14 82.8 94 42.6
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 7.2e-14 82.0 248 30.6
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 7.9e-13 78.6 91 53.8
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 7.9e-13 78.6 140 40.7
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.3e-12 77.0 88 47.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-12 76.6 91 52.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-11 74.7 93 50.5
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.1e-11 74.7 98 45.9
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 3.3e-11 73.2 68 50.0
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.8e-10 69.3 47 61.7
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.2e-08 64.7 70 52.9
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.5e-08 63.2 69 46.4
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 5.9e-08 62.4 153 33.3
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 7.7e-08 62.0 99 45.5
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-07 61.2 54 53.7
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 5.0e-07 59.3 89 44.9


User provided reference genes

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