Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-212 743.0 378 100.0
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.8e-199 699.1 371 96.5
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 1.1e-193 679.9 378 92.9
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.6e-193 678.7 378 92.6
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.4e-191 672.9 385 91.2
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 6.1e-187 657.5 379 89.7
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 2.2e-184 649.0 380 88.2
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 3.7e-184 648.3 371 90.8
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 3.1e-183 645.2 380 87.9
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 8.5e-181 637.1 382 86.4
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 2.0e-177 625.9 381 85.3
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 2.6e-177 625.5 380 86.1
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.3e-176 623.2 380 86.1
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.3e-165 586.6 386 79.8
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 9.8e-161 570.5 331 88.5
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 2.0e-158 562.8 331 87.0
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 2.0e-158 562.8 331 87.0
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 2.1e-155 552.7 331 86.4
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 2.1e-155 552.7 327 86.2
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 5.2e-154 548.1 397 73.8
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.6e-153 545.8 323 86.4
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 4.6e-142 508.4 375 75.5
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.6e-139 500.0 389 73.3
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.8e-139 499.2 366 70.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.1e-138 497.3 394 66.8
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 4.4e-137 491.9 391 69.1
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 7.6e-137 491.1 385 69.1
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 4.9e-136 488.4 388 67.5
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 6.4e-136 488.0 375 66.7
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 6.4e-136 488.0 364 69.0
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 6.4e-136 488.0 385 66.8
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 1.1e-135 487.3 387 67.2
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 1.4e-135 486.9 384 66.1
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 4.1e-135 485.3 396 65.4
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 1.2e-134 483.8 403 65.5
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.2e-134 483.8 383 66.8
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 3.5e-134 482.3 396 65.2
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 3.5e-134 482.3 387 67.7
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 4.6e-134 481.9 364 68.4
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 4.6e-134 481.9 390 65.4
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 7.8e-134 481.1 387 67.4
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 7.8e-134 481.1 368 68.2
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 1.0e-133 480.7 368 67.7
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.7e-133 479.9 366 67.2
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 3.9e-133 478.8 387 66.9
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 6.6e-133 478.0 382 66.2
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 8.6e-133 477.6 364 67.0
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.9e-132 476.5 387 66.1
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.9e-132 476.5 361 68.4
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 5.6e-132 474.9 378 66.1
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 7.3e-132 474.6 363 68.3
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 7.3e-132 474.6 377 65.0
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.2e-131 473.8 368 67.7
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 1.2e-131 473.8 367 67.0
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 2.8e-131 472.6 366 66.9
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 8.1e-131 471.1 321 73.5
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.1e-130 470.7 361 66.8
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.8e-130 469.9 266 90.2
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 4.0e-130 468.8 369 67.5
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 4.0e-130 468.8 361 67.3
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 5.2e-130 468.4 369 66.9
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 5.2e-130 468.4 369 66.7
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 6.9e-130 468.0 368 65.5
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.2e-129 467.2 359 66.6
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 4.4e-129 465.3 335 69.3
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 5.8e-129 464.9 330 71.5
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 5.8e-129 464.9 421 60.6
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 9.9e-129 464.2 421 60.6
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.7e-128 463.4 374 64.4
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.7e-128 463.4 375 65.3
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.6e-126 456.8 323 70.3
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 2.1e-126 456.4 365 65.5
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.1e-126 456.4 387 63.8
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 2.7e-126 456.1 380 63.2
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 4.6e-126 455.3 359 65.2
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 6.0e-126 454.9 368 64.7
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 2.3e-125 453.0 369 65.3
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 2.3e-125 453.0 323 69.7
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.0e-125 452.6 380 63.2
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 6.6e-125 451.4 326 69.6
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 6.6e-125 451.4 323 70.0
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 5.6e-124 448.4 335 68.7
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 5.6e-124 448.4 364 63.5
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.4e-122 443.7 320 70.6
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.8e-122 443.4 379 62.5
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 5.3e-122 441.8 326 66.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 6.9e-122 441.4 370 62.7
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 2.6e-121 439.5 327 67.9
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 4.5e-121 438.7 361 65.7
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.7e-120 436.8 385 61.8
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 3.8e-120 435.6 359 62.7
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 4.9e-120 435.3 402 58.2
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 8.4e-120 434.5 378 60.8
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 1.4e-119 433.7 379 60.2
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.4e-119 433.7 368 61.1
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 5.4e-119 431.8 389 61.4
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 2.1e-118 429.9 437 55.8
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 4.6e-118 428.7 301 71.4
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.0e-117 427.6 299 71.9
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 2.8e-115 419.5 330 65.5
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 6.2e-115 418.3 360 63.6
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 6.9e-114 414.8 293 71.3
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 6.4e-112 408.3 322 66.1
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 8.4e-112 407.9 360 62.8
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 4.8e-107 392.1 273 71.4
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 8.1e-107 391.3 259 74.5
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 9.3e-103 377.9 331 60.1
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 9.6e-100 367.9 266 70.7
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 9.6e-100 367.9 315 59.0
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 2.5e-95 353.2 311 59.2
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 6.7e-93 345.1 337 53.1
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 2.2e-88 330.1 252 67.5
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 5.5e-87 325.5 374 52.9
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 1.4e-85 320.9 365 51.0
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.8e-83 313.2 333 52.3
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.1e-82 309.7 318 54.1
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.5e-79 298.9 396 46.5
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 9.4e-79 298.1 292 53.8
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 6.1e-78 295.4 207 71.5
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.2e-71 273.1 275 56.0
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.0e-69 266.5 210 66.2
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 4.1e-66 256.1 188 69.1
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.5e-63 247.7 340 39.1
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.5e-63 246.9 190 65.3
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 8.0e-62 241.9 179 71.5
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.4e-60 236.5 189 64.0
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 1.2e-57 228.0 359 38.2
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.3e-56 223.8 210 58.6
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 8.6e-56 221.9 205 60.0
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 3.6e-54 216.5 177 63.3
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 2.3e-53 213.8 365 38.6
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.2e-52 211.5 178 63.5
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 7.8e-49 198.7 142 67.6
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.5e-47 194.5 174 58.6
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 6.8e-45 185.7 297 36.4
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.5e-44 184.5 164 59.8
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 9.8e-44 181.8 270 40.4
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.9e-43 180.3 141 62.4
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.3e-40 171.4 380 33.7
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 7.0e-34 149.1 131 59.5
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 2.7e-33 147.1 92 76.1
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 6.2e-30 136.0 171 49.1
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 4.6e-25 119.8 141 51.8
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 9.5e-23 112.1 87 64.4
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 2.6e-20 104.0 80 63.8
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 4.9e-19 99.8 317 30.0
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 4.9e-19 99.8 67 71.6
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 8.1e-14 82.4 71 59.2
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.5e-07 60.8 44 65.9
A10p20470 Brassica napus HOM05D004989 ORTHO05D039594 1.3e-06 58.5 42 73.8


User provided reference genes

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