Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1414.1 726 100.0
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1414.1 726 100.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1268.1 726 90.9
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1267.3 726 89.4
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1208.0 697 90.0
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1125.9 739 79.3
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1084.3 756 76.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.7e-310 1068.9 763 74.7
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 689 82.1
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.1e-306 1056.2 762 75.2
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.3e-302 1042.7 763 73.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 2.2e-302 1042.0 760 74.3
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.2e-300 1036.2 762 73.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 5.1e-299 1030.8 762 73.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 6.9e-296 1020.4 761 72.1
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 6.9e-296 1020.4 761 72.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-294 1016.1 764 71.6
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.3e-294 1016.1 764 71.6
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 6.4e-294 1013.8 762 71.4
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 6.4e-294 1013.8 762 71.4
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 6.0e-292 1007.3 761 71.9
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 5.1e-291 1004.2 761 71.7
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 5.1e-291 1004.2 761 71.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 7.4e-290 1000.3 785 69.6
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 9.3e-277 956.8 754 68.3
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 2.5e-269 932.2 707 71.7
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.4e-259 899.8 757 62.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 2.3e-259 899.0 758 63.3
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.0e-258 896.0 760 63.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.7e-257 892.9 753 62.9
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.8e-257 892.1 761 62.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.4e-256 889.8 778 62.1
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.1e-256 888.6 758 62.3
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 4.1e-256 888.3 758 62.5
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 5.3e-256 887.9 760 62.0
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 7.0e-256 887.5 756 62.8
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.5e-255 886.3 758 62.3
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.5e-255 885.2 758 62.3
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.3e-254 883.2 755 61.9
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 5.0e-254 881.3 748 62.8
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 8.5e-254 880.6 760 61.3
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 8.5e-254 880.6 750 62.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.5e-253 879.8 756 62.3
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.9e-253 879.4 748 63.0
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.9e-253 879.4 760 61.4
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 4.2e-253 878.2 750 62.7
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 7.2e-253 877.5 756 62.3
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.7e-252 875.5 756 62.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 8.8e-251 870.5 751 61.8
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 4.4e-250 868.2 750 61.5
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 7.5e-250 867.5 757 61.2
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 4.8e-249 864.8 753 61.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 1.4e-248 863.2 755 60.5
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.8e-248 862.8 758 60.9
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 4.1e-248 861.7 750 61.2
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 3.8e-246 855.1 764 60.2
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 7.2e-245 850.9 747 60.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.2e-245 850.9 743 60.8
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 7.2e-245 850.9 761 59.7
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.2e-244 850.1 754 60.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.1e-244 849.4 771 59.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 3.6e-244 848.6 748 61.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 6.1e-244 847.8 747 60.2
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.0e-243 847.0 760 61.1
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.4e-243 846.7 760 59.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.4e-243 846.7 771 59.1
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 6.8e-243 844.3 754 59.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.8e-243 844.3 755 60.4
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.5e-242 843.2 781 58.9
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.5e-242 843.2 759 59.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.0e-242 842.8 753 60.4
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.8e-241 838.2 747 61.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 8.3e-241 837.4 754 59.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.8e-240 836.3 748 59.6
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 7.0e-240 834.3 744 60.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.5e-239 832.0 751 59.3
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 6.5e-238 827.8 728 61.1
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.5e-237 825.9 728 60.9
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 5.5e-237 824.7 756 58.6
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.6e-236 823.2 536 79.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.3e-235 819.3 758 58.7
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.0e-234 816.2 741 59.4
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.7e-234 814.7 751 57.8
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 5.7e-234 814.7 750 58.5
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 5.7e-234 814.7 757 57.6
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.8e-234 813.9 711 61.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.3e-233 813.5 758 58.2
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.7e-233 813.1 741 59.4
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 6.3e-233 811.2 753 57.5
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 6.3e-233 811.2 747 57.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 8.3e-233 810.8 747 57.6
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.1e-232 810.4 748 58.3
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.3e-230 802.7 755 58.4
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.5e-229 800.0 752 57.8
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 5.6e-229 798.1 750 57.5
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 9.5e-229 797.3 730 58.6
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.7e-228 795.0 759 56.3
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.8e-227 793.1 743 58.3
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.7e-225 785.4 744 57.5
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 2.4e-224 782.7 749 56.7
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.0e-222 777.3 756 56.5
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.3e-214 750.4 668 60.0
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.4e-208 729.6 768 53.3
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.4e-208 729.6 638 61.4
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 7.3e-205 718.0 742 52.7
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 4.7e-204 715.3 737 54.0
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.1e-203 714.1 760 51.4
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 6.8e-203 711.4 763 51.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 8.9e-203 711.1 658 56.8
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 2.2e-201 706.4 759 52.6
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 7.1e-200 701.4 816 49.3
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.6e-194 682.9 529 66.2
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.1e-188 663.3 534 64.2
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.2e-184 649.4 527 63.8
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 3.0e-182 642.9 642 56.5
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.2e-178 630.9 751 47.5
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.7e-175 619.8 750 47.9
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.6e-170 603.2 748 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.4e-168 597.4 745 44.8
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.4e-168 597.4 751 45.3
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.1e-166 589.0 531 61.2
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.3e-148 531.2 733 41.9
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 4.0e-126 456.4 608 43.8
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.6e-122 444.5 379 64.4
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.5e-122 443.4 745 39.3
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 2.1e-103 380.9 390 53.3
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 3.6e-103 380.2 346 57.2
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-97 360.5 472 47.7
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.3e-94 350.9 703 33.1
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.0e-81 308.9 761 29.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.5e-69 268.5 226 58.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.6e-61 241.1 832 27.4
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.0e-54 217.2 529 32.5
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.3e-46 190.3 217 52.1
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 5.7e-32 143.7 125 57.6
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 3.7e-31 141.0 151 51.0
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-29 135.6 136 56.6
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.8e-25 122.1 102 56.9
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.3e-24 117.9 224 39.7
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.7e-23 115.5 86 67.4
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 6.3e-23 113.6 217 34.6
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 6.5e-20 103.6 161 42.2
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.9e-19 102.1 114 48.2
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.6e-18 97.8 146 43.2
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.0e-18 96.7 75 65.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 2.7e-13 81.6 82 54.9
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 5.9e-13 80.5 110 39.1
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.0e-12 79.7 72 55.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.3e-12 79.3 87 54.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.2e-12 78.6 96 50.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.0e-12 77.4 99 41.4
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 8.8e-09 66.6 67 53.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.6e-08 65.1 66 48.5
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 4.4e-08 64.3 115 37.4
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 4.4e-08 64.3 79 49.4
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 9.8e-08 63.2 88 43.2
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-07 62.8 64 53.1
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-07 62.8 64 53.1
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 3.7e-07 61.2 64 53.1
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 8.3e-07 60.1 64 51.6


User provided reference genes

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