Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 9.4e-99 363.6 195 100.0
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 1.6e-98 362.8 195 99.5
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 7.2e-91 337.4 182 100.0
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 2.1e-82 309.3 185 93.5
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 2.1e-82 309.3 185 93.5
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 9.8e-80 300.4 184 91.3
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 6.1e-74 281.2 185 85.9
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 1.2e-72 276.9 184 85.3
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 1.1e-70 270.4 183 84.7
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.8e-70 269.6 185 83.8
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 2.4e-70 269.2 184 82.1
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 7.8e-69 264.2 184 81.0
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 1.7e-68 263.1 183 82.0
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 1.7e-68 263.1 179 82.1
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 2.9e-68 262.3 182 80.8
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 3.3e-67 258.8 176 81.8
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 7.3e-67 257.7 176 81.8
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.9e-55 219.2 179 70.4
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 1.2e-53 213.8 184 67.4
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 1.5e-40 170.2 135 74.1
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 2.9e-39 166.0 182 56.6
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 8.4e-39 164.5 177 55.4
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 1.2e-37 160.6 188 56.9
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 2.7e-37 159.5 186 55.4
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 7.8e-37 157.9 187 53.5
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 1.0e-36 157.5 180 55.6
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 1.3e-36 157.1 192 53.1
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 5.1e-36 155.2 113 72.6
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 2.5e-35 152.9 127 65.4
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 9.6e-35 151.0 96 80.2
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.6e-34 150.2 180 53.9
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 1.6e-34 150.2 189 55.6
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.1e-34 149.8 96 79.2
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 3.6e-34 149.1 183 54.1
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 4.7e-34 148.7 143 60.8
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 4.7e-34 148.7 96 78.1
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 6.2e-34 148.3 96 78.1
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 8.1e-34 147.9 95 80.0
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.1e-33 147.5 95 77.9
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 1.1e-33 147.5 95 77.9
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.4e-33 147.1 187 52.4
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 1.8e-33 146.7 96 77.1
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.8e-33 146.7 96 77.1
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 1.8e-33 146.7 104 72.1
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 2.4e-33 146.4 90 81.1
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 2.4e-33 146.4 135 60.7
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 2.4e-33 146.4 105 73.3
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 2.4e-33 146.4 95 76.8
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 3.1e-33 146.0 172 54.1
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 3.1e-33 146.0 95 77.9
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 5.2e-33 145.2 95 76.8
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 5.2e-33 145.2 95 76.8
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 5.2e-33 145.2 95 76.8
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 5.2e-33 145.2 187 51.9
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 1.2e-32 144.1 98 76.5
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 1.5e-32 143.7 96 77.1
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 2.0e-32 143.3 104 71.2
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.6e-32 142.9 171 53.2
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 2.6e-32 142.9 171 53.2
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 2.6e-32 142.9 98 73.5
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 3.4e-32 142.5 95 74.7
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 5.8e-32 141.7 93 77.4
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 7.6e-32 141.4 187 52.4
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 9.9e-32 141.0 112 67.0
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 1.3e-31 140.6 137 62.0
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 1.3e-31 140.6 95 77.9
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.2e-31 139.8 112 66.1
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 2.2e-31 139.8 96 72.9
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 2.2e-31 139.8 95 77.9
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.9e-31 139.4 95 76.8
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 2.9e-31 139.4 97 73.2
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 3.8e-31 139.0 95 76.8
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 3.8e-31 139.0 99 71.7
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 1.9e-30 136.7 95 72.6
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 2.4e-30 136.3 95 73.7
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 3.2e-30 136.0 93 71.0
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 3.2e-30 136.0 94 69.1
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 4.2e-30 135.6 86 77.9
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 4.2e-30 135.6 89 78.7
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 7.1e-30 134.8 95 71.6
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 1.2e-29 134.0 96 75.0
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.2e-29 134.0 89 75.3
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 1.6e-29 133.7 185 51.9
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 2.7e-29 132.9 97 69.1
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 3.5e-29 132.5 86 76.7
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 6.0e-29 131.7 92 72.8
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 7.8e-29 131.3 99 68.7
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 7.8e-29 131.3 96 74.0
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 1.0e-28 131.0 97 72.2
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 1.0e-28 131.0 102 69.6
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 1.0e-28 131.0 98 71.4
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 1.7e-28 130.2 181 48.1
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 3.9e-28 129.0 98 69.4
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 8.7e-28 127.9 86 75.6
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 1.1e-27 127.5 184 47.8
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 2.5e-27 126.3 75 84.0
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 4.3e-27 125.6 75 84.0
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 2.1e-26 123.2 98 64.3
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 4.8e-26 122.1 95 67.4
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 6.2e-26 121.7 221 40.7
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 8.1e-26 121.3 95 64.2
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 2.4e-25 119.8 137 51.8
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 5.3e-25 118.6 84 69.0
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 1.2e-24 117.5 114 58.8
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 4.5e-24 115.5 73 78.1
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 4.9e-23 112.1 67 82.1
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 1.8e-20 103.6 96 57.3
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.5e-19 100.5 82 59.8
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 1.1e-17 94.4 96 49.0
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 1.2e-16 90.9 138 47.8
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 5.8e-16 88.6 77 59.7
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 4.2e-14 82.4 45 84.4
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 4.2e-14 82.4 45 84.4
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.2e-13 80.9 45 86.7
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 2.1e-13 80.1 72 48.6
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 2.7e-13 79.7 59 66.1
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 7.9e-13 78.2 102 47.1
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 9.0e-09 64.7 47 78.7
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.0e-08 63.5 66 56.1
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.4e-08 62.8 74 54.1
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.3e-07 60.8 39 79.5
AL3G13180 Arabidopsis lyrata HOM05D058763 ORTHO05D079728 2.9e-07 59.7 58 56.9
Aa31LG5G14020 Aethionema arabicum HOM05D006461 ORTHO05D008199 1.9e-06 57.0 109 43.1
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 3.2e-06 56.2 90 38.9
Sc16g0010190 Simmondsia chinensis HOM05D002854 ORTHO05D003051 3.2e-06 56.2 82 40.2
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 3.2e-06 56.2 113 36.3
Nitab4.5_0000598g0090 Nicotiana tabacum HOM05D002854 ORTHO05D003051 4.2e-06 55.8 147 32.0
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 5.5e-06 55.5 99 38.4
TAR624G0331 Trochodendron aralioides HOM05D002854 ORTHO05D003051 7.1e-06 55.1 113 34.5


User provided reference genes

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