Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p09800 Brassica napus HOM05D002378 ORTHO05D021942 1.8e-67 259.2 144 100.0
C01p40680 Brassica napus HOM05D002378 ORTHO05D021942 1.7e-60 236.1 144 91.7
A08p04270 Brassica napus HOM05D002378 ORTHO05D002936 9.8e-53 210.3 134 84.3
BraA08t32454Z Brassica rapa HOM05D002378 ORTHO05D002936 9.8e-53 210.3 134 84.3
BcaC07g37090 Brassica carinata HOM05D002378 ORTHO05D002936 2.9e-52 208.8 134 83.6
C08p04540 Brassica napus HOM05D002378 ORTHO05D002936 2.9e-52 208.8 134 83.6
BolC8t47258H Brassica oleracea HOM05D002378 ORTHO05D002936 2.9e-52 208.8 134 83.6
BcaB04g17375 Brassica carinata HOM05D002378 ORTHO05D002936 7.3e-48 194.1 131 80.2
Sp1g35880 Schrenkiella parvula HOM05D002378 ORTHO05D002936 3.2e-43 178.7 130 73.8
Thhalv10011298m.g Eutrema salsugineum HOM05D002378 ORTHO05D002936 9.2e-43 177.2 132 75.0
CARHR038980 Cardamine hirsuta HOM05D002378 ORTHO05D002936 1.3e-36 156.8 133 68.4
AL1G55800 Arabidopsis lyrata HOM05D002378 ORTHO05D002936 3.7e-36 155.2 136 68.4
Carub.0001s3814 Capsella rubella HOM05D002378 ORTHO05D002936 2.4e-35 152.5 133 74.4
AT1G48970 Arabidopsis thaliana HOM05D002378 ORTHO05D002936 1.2e-34 150.2 134 71.6
BcaC09g49272 Brassica carinata HOM05D002378 ORTHO05D021942 5.6e-32 141.4 79 91.1
BolC4t24766H Brassica oleracea HOM05D002378 ORTHO05D021942 2.4e-30 136.0 98 77.6
Aa31LG10G4960 Aethionema arabicum HOM05D002378 ORTHO05D002936 2.1e-26 122.9 135 58.5
BolC3t13469H Brassica oleracea HOM05D002378 ORTHO05D021942 7.6e-21 104.4 53 98.1
Manes.05G118200 Manihot esculenta HOM05D002378 ORTHO05D002936 1.0e-17 94.0 132 50.8
Sabra12G0040600 Salix brachista HOM05D002378 ORTHO05D002936 7.3e-16 87.8 138 44.9
Potri.012G059300 Populus trichocarpa HOM05D002378 ORTHO05D002936 8.1e-15 84.3 138 42.8
RcHm_v2.0_Chr7g0184441 Rosa chinensis HOM05D002378 ORTHO05D002936 8.1e-15 84.3 132 45.5
Cpa.g.sc13.58 Carica papaya HOM05D002378 ORTHO05D002936 2.4e-14 82.8 135 44.4
Duzib068G0447 Durio zibethinus HOM05D002378 ORTHO05D002936 5.3e-14 81.6 133 45.9
Aqoxy3G03892 Aquilegia oxysepala HOM05D002378 ORTHO05D002936 3.4e-13 79.0 141 44.0
Hma1.2p1_0340F.1_g129970 Hydrangea macrophylla HOM05D002378 ORTHO05D002936 7.6e-13 77.8 126 43.7
MD14G1221000 Malus domestica HOM05D002378 ORTHO05D002936 1.3e-12 77.0 125 44.0
Atru.chr9.739 Acer truncatum HOM05D002378 ORTHO05D002936 1.7e-12 76.6 135 45.9
Eucgr.B00690 Eucalyptus grandis HOM05D002378 ORTHO05D002936 1.7e-12 76.6 142 46.5
FvH4_5g12800 Fragaria vesca HOM05D002378 ORTHO05D002936 2.2e-12 76.3 132 44.7
FAN18G2406 Fragaria x ananassa HOM05D002378 ORTHO05D002936 2.2e-12 76.3 132 44.7
Dinv38595 Davidia involucrata HOM05D002378 ORTHO05D002936 2.9e-12 75.9 136 44.9
Duzib084G0818 Durio zibethinus HOM05D002378 ORTHO05D002936 2.9e-12 75.9 138 42.8
FAN18G2445 Fragaria x ananassa HOM05D002378 ORTHO05D002936 3.8e-12 75.5 132 44.7
Rhsim12G0144900 Rhododendron simsii HOM05D002378 ORTHO05D002936 6.4e-12 74.7 139 44.6
ClCG06G015090 Citrullus lanatus HOM05D002378 ORTHO05D002936 8.4e-12 74.3 126 45.2
MELO3C017280.2 Cucumis melo HOM05D002378 ORTHO05D002936 1.1e-11 73.9 126 45.2
CsaV3_1G003550 Cucumis sativus L. HOM05D002378 ORTHO05D002936 1.4e-11 73.6 124 45.2
FAN08G3159 Fragaria x ananassa HOM05D002378 ORTHO05D002936 3.2e-11 72.4 132 42.4
Thecc.03G027400 Theobroma cacao HOM05D002378 ORTHO05D002936 1.6e-10 70.1 133 43.6
MELO3C017281.2 Cucumis melo HOM05D002378 ORTHO05D002936 2.1e-10 69.7 137 40.1
CsaV3_1G003560 Cucumis sativus L. HOM05D002378 ORTHO05D002936 2.1e-10 69.7 137 40.1
ClCG06G015080 Citrullus lanatus HOM05D002378 ORTHO05D002936 2.7e-10 69.3 137 38.7
Sed0001506 Sechium edule HOM05D002378 ORTHO05D002936 3.5e-10 68.9 149 42.3
Actinidia35073 Actinidia chinensis HOM05D002378 ORTHO05D002936 4.6e-10 68.6 136 39.7
TWI81G0305 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 6.0e-10 68.2 133 39.1
TWI15G1079 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 7.9e-10 67.8 129 41.1
MD06G1210100 Malus domestica HOM05D002378 ORTHO05D002936 1.3e-09 67.0 125 42.4
Ciclev10019126m.g Citrus clementina HOM05D002378 ORTHO05D002936 2.3e-09 66.2 129 38.0
Nn4g23696 Nelumbo nucifera HOM05D002378 ORTHO05D002936 3.0e-09 65.9 134 43.3
CANSAT80G1104 Cannabis sativa HOM05D002378 ORTHO05D002936 6.7e-09 64.7 135 44.4
CSS0029737 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 1.1e-08 63.9 128 39.1
Lj5A141T92 Lonicera japonica HOM05D002378 ORTHO05D002936 1.1e-08 63.9 136 43.4
PGR083G2054 Punica granatum HOM05D002378 ORTHO05D002936 5.6e-08 61.6 142 37.3
Prupe.5G216300 Prunus persica HOM05D002378 ORTHO05D002936 7.4e-08 61.2 122 40.2
Lj9A432T68 Lonicera japonica HOM05D002378 ORTHO05D002936 1.3e-07 60.5 126 41.3
MBI16_g23769_MAGBIO Magnolia biondii HOM05D002378 ORTHO05D002936 1.3e-07 60.5 135 43.0
Gorai.006G063500 Gossypium raimondii HOM05D002378 ORTHO05D002936 1.6e-07 60.1 133 38.3
Lalb_Chr08g0235111 Lupinus albus HOM05D002378 ORTHO05D002936 1.6e-07 60.1 130 35.4
Nitab4.5_0000208g0140 Nicotiana tabacum HOM05D002378 ORTHO05D002936 2.1e-07 59.7 135 39.3
HanXRQChr05g0157741 Helianthus annuus HOM05D002378 ORTHO05D002936 2.8e-07 59.3 140 41.4
Gohir.A09G044900 Gossypium hirsutum HOM05D002378 ORTHO05D002936 3.7e-07 58.9 133 39.1
Psat1g025720 Pisum sativum HOM05D002378 ORTHO05D002936 3.7e-07 58.9 137 40.1
Gohir.D09G046600 Gossypium hirsutum HOM05D002378 ORTHO05D002936 4.8e-07 58.5 133 38.3
Nn3g17690 Nelumbo nucifera HOM05D002378 ORTHO05D002936 4.8e-07 58.5 127 37.8
COL.COLO4_22702 Corchorus olitorius HOM05D002378 ORTHO05D002936 6.2e-07 58.2 133 39.1
DCAR_011340 Daucus carota HOM05D002378 ORTHO05D002936 6.2e-07 58.2 134 41.8
TAR371G0108 Trochodendron aralioides HOM05D002378 ORTHO05D002936 6.2e-07 58.2 134 39.6
CSS0027164 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 8.1e-07 57.8 135 41.5
CSS0031813 Camellia sinensis var. sinensis HOM05D002378 ORTHO05D002936 8.1e-07 57.8 132 41.7
TAR629G0462 Trochodendron aralioides HOM05D002378 ORTHO05D002936 1.1e-06 57.4 118 39.8
Lsat_1_v5_gn_5_24260 Lactuca sativa HOM05D002378 ORTHO05D002936 1.4e-06 57.0 140 40.7
Medtr2g055750 Medicago truncatula HOM05D002378 ORTHO05D002936 1.4e-06 57.0 137 38.7
MSTRG.23823 Avicennia marina HOM05D002378 ORTHO05D002936 1.8e-06 56.6 137 39.4
CiPaw.15G125400 Carya illinoinensis HOM05D002378 ORTHO05D002936 1.8e-06 56.6 129 40.3
TWI77G0650 Tripterygium wilfordii HOM05D002378 ORTHO05D002936 1.8e-06 56.6 140 39.3
HPP92_014008 Vanilla planifolia HOM05D002378 ORTHO05D002936 1.8e-06 56.6 135 37.8
Hund16116 Selenicereus undatus HOM05D002378 ORTHO05D002936 3.1e-06 55.8 135 39.3
TAR371G0705 Trochodendron aralioides HOM05D002378 ORTHO05D023460 3.1e-06 55.8 134 38.8
CDE02G2012 Ceratophyllum demersum HOM05D002378 ORTHO05D002936 4.0e-06 55.5 132 32.6
HPP92_026838 Vanilla planifolia HOM05D002378 ORTHO05D002936 4.0e-06 55.5 135 37.0
CiPaw.16G083400 Carya illinoinensis HOM05D002378 ORTHO05D002936 6.9e-06 54.7 132 40.9
Haze_18594 Corylus avellana HOM05D002378 ORTHO05D002936 6.9e-06 54.7 141 39.0
GSVIVG01008226001 Vitis vinifera HOM05D002378 ORTHO05D002936 6.9e-06 54.7 133 38.3


User provided reference genes

Program Settings