Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1703.7 919 100.0
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 0.0e+00 1582.8 886 96.8
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 0.0e+00 1562.7 879 96.4
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 0.0e+00 1427.9 897 85.7
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1424.1 898 83.1
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 0.0e+00 1422.9 898 83.0
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 0.0e+00 1421.0 900 87.3
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1419.1 897 82.5
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 0.0e+00 1409.8 900 82.1
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 0.0e+00 1389.0 893 85.1
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 0.0e+00 1382.9 889 84.8
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 0.0e+00 1375.5 899 85.4
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 0.0e+00 1365.5 889 85.5
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 0.0e+00 1292.7 929 78.7
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 0.0e+00 1279.2 893 82.0
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1269.2 719 96.1
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 0.0e+00 1233.8 889 78.1
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 0.0e+00 1217.2 895 69.4
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 0.0e+00 1199.1 898 74.1
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 0.0e+00 1109.7 821 77.1
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.3e-291 1006.5 655 86.1
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 3.1e-285 985.3 913 56.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.6e-284 982.2 906 56.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.2e-282 974.2 916 56.4
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 7.2e-282 974.2 915 55.5
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.5e-274 949.1 906 55.7
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 6.9e-269 931.0 910 56.0
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 2.5e-266 922.5 911 53.5
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.1e-263 913.7 929 52.2
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.3e-262 910.2 909 53.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.6e-260 903.3 910 52.5
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.6e-260 903.3 900 53.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-260 902.9 895 52.8
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.0e-259 900.6 900 58.7
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 2.5e-258 896.0 800 58.5
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.2e-258 895.2 928 51.4
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 2.7e-257 892.5 894 53.6
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-257 892.1 903 52.4
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 8.0e-257 891.0 901 52.5
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.0e-255 886.3 887 52.5
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 3.3e-255 885.6 901 54.7
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 7.5e-255 884.4 918 51.6
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 9.1e-253 877.5 902 51.4
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-252 876.7 912 52.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.5e-252 875.2 897 51.8
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.0e-251 874.0 904 51.9
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.0e-251 874.0 903 52.7
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 2.9e-251 872.5 908 51.5
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.5e-250 870.2 908 51.7
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 4.4e-247 858.6 931 50.3
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 4.5e-244 848.6 900 51.4
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 6.5e-243 844.7 907 50.2
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 4.2e-242 842.0 988 48.0
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 6.1e-241 838.2 874 51.5
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.4e-239 832.4 911 49.8
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 2.1e-233 813.1 918 50.5
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 4.7e-233 812.0 894 51.5
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 8.0e-233 811.2 930 51.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.2e-232 808.5 849 51.7
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.4e-229 800.4 908 49.6
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.4e-229 799.7 898 49.2
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 7.0e-229 798.1 918 50.4
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.2e-228 797.3 911 49.8
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 5.0e-227 792.0 932 50.0
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.5e-226 790.4 910 48.2
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.5e-226 790.4 924 48.4
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.6e-225 786.9 920 47.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.4e-224 783.9 916 46.7
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 1.2e-223 780.8 921 47.0
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 5.4e-221 771.9 908 48.6
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 6.6e-219 765.0 868 48.4
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 8.6e-219 764.6 875 50.1
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 4.3e-218 762.3 925 49.1
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 9.5e-218 761.1 917 46.9
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 8.1e-217 758.1 917 46.9
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 3.1e-216 756.1 928 45.2
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.7e-214 750.4 871 47.9
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 7.8e-212 741.5 921 48.6
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-208 729.9 873 48.6
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 9.9e-207 724.5 897 46.0
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.1e-205 721.1 891 49.6
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 2.4e-205 719.9 895 50.3
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.2e-205 719.5 913 48.1
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 4.1e-205 719.2 914 47.5
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.1e-204 716.8 709 53.2
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 7.3e-202 708.4 671 55.4
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.1e-196 690.3 916 46.3
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.9e-194 683.7 919 46.9
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.8e-184 650.6 689 50.5
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 6.9e-184 648.7 681 54.5
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.5e-183 647.5 1151 37.1
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 8.2e-177 625.2 1047 39.0
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.0e-174 618.2 754 46.7
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 5.1e-171 605.9 913 42.9
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 7.4e-170 602.1 632 50.6
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-168 597.4 543 57.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.6e-156 557.8 491 58.2
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 1.8e-155 554.3 894 38.3
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 2.7e-148 530.4 903 39.0
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 3.8e-142 510.0 954 39.1
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.5e-142 508.8 450 58.0
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.1e-132 477.6 475 52.4
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.8e-129 466.5 474 51.5
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 6.3e-121 439.5 502 47.4
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-117 427.9 337 81.0
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.5e-114 418.3 922 34.8
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 9.8e-114 415.6 468 48.7
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.1e-112 412.1 463 50.3
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 9.2e-112 409.1 412 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 4.4e-106 390.2 468 44.7
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.7e-103 380.9 228 81.6
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.7e-103 380.9 410 51.2
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-96 359.0 487 43.7
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.9e-94 350.5 451 45.5
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 4.3e-93 347.1 354 51.1
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.7e-92 343.6 222 72.1
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 4.7e-92 343.6 222 72.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 5.4e-88 330.1 377 48.8
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 2.1e-79 301.6 191 84.3
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.1e-75 289.3 473 38.7
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-75 288.9 217 64.1
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 9.0e-75 286.2 539 35.1
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-74 285.8 859 28.1
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-74 285.8 266 56.4
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 2.6e-74 284.6 745 29.7
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-73 282.3 391 42.7
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.1e-72 279.3 190 75.3
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-72 279.3 317 48.9
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.6e-71 273.9 196 74.5
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.7e-68 264.2 278 54.0
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 1.9e-64 251.9 342 43.3
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 2.1e-60 238.4 502 33.1
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-57 228.8 246 51.2
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.7e-55 221.5 300 42.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 3.1e-51 208.0 467 31.5
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 9.4e-48 196.4 378 39.7
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-37 162.9 112 74.1
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.6e-37 161.8 137 54.0
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 9.7e-37 159.8 612 25.0
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.5e-34 152.5 149 54.4
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.5e-34 152.5 149 54.4
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.5e-33 146.7 113 61.9
C04p45760 Brassica napus HOM05D004183 ORTHO05D005022 9.1e-27 126.7 89 71.9
BolC4t26161H Brassica oleracea HOM05D004183 ORTHO05D005022 4.5e-26 124.4 89 70.8
BcaB06g27300 Brassica carinata HOM05D004183 ORTHO05D005022 5.9e-26 124.0 77 77.9
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-23 116.3 167 40.7
CARHR154530 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.6e-23 115.9 67 85.1
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-23 115.5 113 53.1
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-23 114.8 167 40.1
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-22 112.8 138 43.5
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 2.3e-22 112.1 78 71.8
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 5.0e-17 94.4 64 75.0
BolC8t52359H Brassica oleracea HOM05D016195 ORTHO05D033444 3.2e-16 91.7 53 86.8
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.6e-15 89.4 102 44.1
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.6e-15 89.4 200 35.0
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 8.0e-15 87.0 70 60.0
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 2.3e-14 85.5 79 51.9
BolC2t09896H Brassica oleracea HOM05D016195 ORTHO05D033444 6.8e-14 84.0 53 79.2
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.8e-13 80.1 44 84.1
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-13 80.1 143 35.0
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 5.0e-09 67.8 152 38.2
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 9.5e-08 63.5 84 46.4
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 3.6e-07 61.6 134 30.6


User provided reference genes

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