Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 7.3e-125 450.7 244 100.0
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 1.3e-113 413.3 226 98.2
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-113 411.0 225 96.9
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-107 393.7 225 92.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-102 375.6 226 86.7
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 5.1e-102 374.8 225 86.2
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 3.7e-100 368.6 226 81.0
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-99 365.2 227 85.5
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-97 359.0 227 80.2
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-92 342.4 224 78.1
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 6.2e-92 341.3 200 92.5
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-91 339.7 221 84.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-90 337.0 221 84.2
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.4e-90 335.5 223 83.0
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 4.3e-85 318.5 237 76.4
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-81 306.6 232 72.8
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 5.5e-80 301.6 230 74.8
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-76 288.1 223 65.9
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-75 287.3 151 92.7
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 5.3e-75 285.0 231 71.0
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-73 280.0 166 82.5
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 6.5e-73 278.1 180 76.7
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 6.5e-73 278.1 180 76.7
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-72 276.9 237 70.5
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-70 269.6 228 66.2
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 6.5e-65 251.5 231 65.8
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-64 250.4 226 58.0
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-63 247.3 234 64.1
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 6.7e-62 241.5 179 65.4
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 9.7e-61 237.7 201 64.2
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 3.2e-56 222.6 227 62.6
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 9.4e-56 221.1 227 62.1
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 5.9e-50 201.8 163 68.7
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.5e-48 196.4 233 47.6
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 4.7e-47 192.2 184 55.4
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.7e-44 182.6 161 54.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.3e-44 181.4 174 51.7
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 7.0e-43 178.3 179 65.9
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.5e-40 170.6 156 55.8
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 7.2e-40 168.3 156 53.2
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 4.7e-39 165.6 172 49.4
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-38 163.7 163 52.1
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 4.0e-38 162.5 172 49.4
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-36 157.5 161 50.3
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.3e-36 157.5 161 50.3
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-36 157.1 161 50.3
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-36 157.1 171 48.5
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-36 157.1 171 48.5
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-36 156.8 161 50.3
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 8.3e-36 154.8 161 49.7
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-35 154.1 225 43.1
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 4.1e-35 152.5 161 50.3
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 9.2e-35 151.4 168 44.0
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 9.2e-35 151.4 151 51.7
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-33 147.5 173 48.0
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-32 143.7 168 42.9
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.5e-32 143.3 181 42.5
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-32 142.1 166 48.2
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 5.6e-32 142.1 168 41.7
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-31 140.6 169 41.4
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.6e-31 140.6 178 41.0
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.8e-31 139.8 174 42.0
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.9e-30 134.8 169 41.4
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.7e-28 130.6 148 45.3
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.2e-27 126.3 186 40.9
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.1e-27 125.9 148 42.6
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.0e-27 125.2 151 43.7
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-26 124.0 178 42.7
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-26 123.6 149 47.0
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 3.5e-26 122.9 121 70.2
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 3.5e-26 122.9 165 41.2
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 6.6e-25 118.6 143 44.8
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 8.6e-25 118.2 143 44.8
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-24 117.5 148 39.2
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.6e-23 112.8 153 38.6
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.2e-23 112.1 146 40.4
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.8e-22 108.6 144 38.2
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.9e-22 108.2 189 39.7
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 4.4e-21 105.9 157 40.8
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.8e-21 105.5 158 44.3
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-20 104.4 190 34.7
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-20 104.0 193 37.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.2e-20 103.6 167 37.1
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 3.7e-20 102.8 164 39.0
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-19 100.5 166 38.6
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-19 99.8 157 40.1
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 3.2e-19 99.8 189 34.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 9.2e-19 98.2 158 38.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-18 97.8 168 39.9
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.6e-18 97.4 163 39.9
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-18 97.1 155 41.3
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-18 97.1 155 41.3
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-18 97.1 160 40.0
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.7e-18 96.7 142 38.7
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 3.0e-17 93.2 195 35.4
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 6.6e-17 92.0 165 37.6
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 5.6e-16 89.0 102 48.0
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 5.6e-16 89.0 102 48.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.1e-15 87.0 158 37.3
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 2.1e-15 87.0 158 37.3
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-14 84.0 160 37.5
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.8e-14 84.0 87 51.7
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 3.1e-14 83.2 163 35.6
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-14 82.8 161 37.3
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 5.2e-14 82.4 159 37.1
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.2e-13 81.3 159 37.1
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.2e-13 81.3 159 37.1
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-13 80.9 74 54.1
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.0e-13 80.5 172 34.3
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 2.6e-13 80.1 181 33.7
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.4e-13 79.7 155 35.5
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.4e-13 79.3 124 37.9
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 7.5e-13 78.6 168 36.3
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.5e-13 78.6 186 33.3
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 9.9e-13 78.2 157 37.6
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 9.9e-13 78.2 181 33.7
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.9e-13 78.2 186 33.3
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.3e-12 77.8 82 47.6
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.3e-12 77.8 159 37.1
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-12 77.0 156 37.8
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.2e-12 77.0 178 34.8
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.9e-12 76.6 83 49.4
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 6.4e-12 75.5 158 32.3
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 8.3e-12 75.1 158 34.8
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-11 74.7 135 32.6
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.4e-11 74.3 153 32.0
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.9e-11 73.9 149 36.2
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.4e-11 73.6 149 36.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 2.4e-11 73.6 134 38.8
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 2.4e-11 73.6 134 38.8
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 3.2e-11 73.2 149 36.2
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 3.2e-11 73.2 166 33.7
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 3.2e-11 73.2 166 33.7
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 7.1e-11 72.0 162 34.6
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-10 71.2 153 33.3
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-10 71.2 164 34.8
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.6e-10 70.9 180 31.1
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.1e-10 70.5 160 33.8
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 2.7e-10 70.1 165 37.0
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.5e-10 69.7 153 34.0
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.5e-10 69.7 186 32.3
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 3.5e-10 69.7 157 31.8
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 3.5e-10 69.7 185 33.0
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.0e-09 68.2 78 44.9
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.0e-09 68.2 152 32.2
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-09 67.8 158 32.3
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 1.3e-09 67.8 86 45.3
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-09 67.0 162 32.1
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 3.0e-09 66.6 114 34.2
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.9e-09 66.2 188 33.0
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-08 64.7 155 36.1
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 1.1e-08 64.7 140 37.9
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.5e-08 64.3 145 33.1
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.2e-07 58.9 156 30.8
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 1.4e-06 57.8 55 54.5


User provided reference genes

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