Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 2.9e-164 582.0 333 100.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.5e-162 575.1 340 97.9
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 4.3e-160 568.2 334 97.6
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-157 560.1 341 93.8
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.2e-141 506.9 350 83.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 5.8e-141 504.6 350 82.9
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 4.9e-140 501.5 352 82.7
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 4.9e-140 501.5 352 82.7
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 8.7e-137 490.7 249 99.6
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 5.6e-136 488.0 354 79.1
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 8.1e-135 484.2 333 85.3
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.7e-132 476.5 341 80.6
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-131 473.0 347 83.3
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 2.1e-130 469.5 349 83.4
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 7.9e-130 467.6 341 83.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 7.9e-130 467.6 353 81.3
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-129 466.8 345 79.1
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-129 466.8 345 79.1
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.3e-129 466.1 337 82.8
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 3.7e-127 458.8 346 81.8
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 5.3e-126 454.9 361 76.2
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 9.0e-126 454.1 347 81.6
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 2.0e-125 453.0 336 83.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.1e-99 367.5 338 69.5
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 3.7e-87 325.9 330 66.7
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.9e-76 289.7 335 54.9
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.6e-74 283.9 252 63.5
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.1e-74 283.5 332 53.0
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.2e-66 257.7 258 60.1
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.1e-66 256.9 334 51.5
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.3e-60 237.7 335 49.6
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.7e-60 237.3 339 51.6
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.7e-60 237.3 247 59.9
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.9e-59 233.8 347 47.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.8e-58 229.9 251 57.0
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.2e-58 228.8 248 57.7
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.4e-57 227.6 238 60.5
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 3.1e-57 226.5 326 45.7
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.1e-57 226.5 336 50.3
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.1e-57 226.5 248 56.9
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 4.0e-57 226.1 250 57.6
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.0e-57 226.1 331 51.1
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 5.2e-57 225.7 319 46.1
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 8.9e-57 224.9 326 46.6
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-56 224.6 326 46.6
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.2e-56 224.6 248 56.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-56 224.2 326 45.4
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.6e-56 223.4 333 44.4
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 5.8e-56 222.2 238 59.7
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.3e-55 221.1 259 57.5
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.7e-55 220.7 333 43.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.2e-55 220.3 347 55.0
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 3.7e-55 219.5 331 46.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.9e-55 219.2 243 57.2
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.4e-55 218.8 239 56.9
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 6.4e-55 218.8 252 56.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.1e-54 218.0 239 56.9
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.4e-54 217.6 255 56.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.4e-54 216.9 332 44.3
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.2e-54 216.5 323 51.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.1e-54 216.1 240 55.4
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 7.1e-54 215.3 335 45.1
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 7.1e-54 215.3 237 57.0
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.2e-53 214.5 320 45.9
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.2e-53 214.5 320 45.9
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.2e-53 214.5 274 51.8
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-53 214.5 244 54.9
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.6e-53 214.2 306 47.1
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.7e-53 213.4 237 57.0
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.7e-53 213.4 236 57.2
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.7e-53 213.4 250 55.6
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 4.6e-53 212.6 235 57.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 6.0e-53 212.2 224 57.6
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.8e-53 211.8 234 54.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.0e-52 211.5 251 54.6
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.3e-52 211.1 317 49.2
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.3e-52 211.1 332 46.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.0e-52 209.9 317 45.7
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.0e-52 209.9 337 46.9
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 5.1e-52 209.1 235 54.9
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 5.1e-52 209.1 254 53.5
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.6e-52 208.4 333 45.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 8.6e-52 208.4 250 53.2
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-51 208.0 257 56.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.9e-51 207.2 237 54.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.3e-51 206.1 236 55.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.3e-51 206.1 322 46.0
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 7.3e-51 205.3 239 55.6
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 7.3e-51 205.3 235 55.7
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 9.5e-51 204.9 235 55.7
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 9.5e-51 204.9 334 43.7
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-50 204.1 326 44.2
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.1e-50 203.8 227 55.1
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.8e-50 203.4 235 55.3
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 2.8e-50 203.4 338 40.5
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 3.6e-50 203.0 240 55.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 6.2e-50 202.2 247 51.8
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.2e-50 202.2 332 45.2
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 8.1e-50 201.8 243 54.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.1e-49 201.4 314 44.6
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.4e-49 201.1 334 43.4
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 4.0e-49 199.5 216 59.3
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.0e-49 199.5 326 41.4
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.0e-49 199.5 255 52.2
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.2e-49 199.1 262 53.1
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 8.9e-49 198.4 325 42.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 8.9e-49 198.4 324 43.5
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.4e-48 196.4 216 56.5
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.4e-48 196.1 231 54.5
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 5.8e-48 195.7 239 53.6
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.3e-47 194.5 247 52.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.2e-47 193.7 286 49.7
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 2.9e-47 193.4 266 50.8
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.7e-47 193.0 253 51.4
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 8.3e-47 191.8 239 50.6
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 8.3e-47 191.8 263 54.4
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.1e-46 191.4 261 51.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.4e-46 190.3 245 53.1
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.4e-46 190.3 236 53.8
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.4e-46 190.3 335 42.1
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.2e-46 189.9 264 51.1
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 9.2e-46 188.3 233 51.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.1e-45 187.2 244 52.5
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.7e-45 186.8 328 41.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.5e-45 186.4 256 46.1
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 5.1e-44 182.6 327 41.6
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.9e-43 180.6 321 42.4
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.9e-43 180.6 324 41.7
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.3e-43 179.9 364 39.0
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.3e-43 178.7 263 48.3
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 7.3e-43 178.7 252 49.2
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 1.2e-42 177.9 259 48.6
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.6e-42 177.6 259 49.0
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.1e-42 177.2 152 65.8
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.8e-42 176.8 251 47.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 3.1e-41 173.3 256 47.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 3.1e-41 173.3 213 55.4
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.4e-40 169.9 265 45.3
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 9.9e-40 168.3 232 53.0
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.7e-39 167.5 251 48.2
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.2e-39 167.2 175 59.4
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 4.9e-39 166.0 262 43.5
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.4e-38 164.5 234 48.3
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 3.2e-38 163.3 265 43.8
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 5.4e-38 162.5 360 37.5
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.0e-37 159.1 234 46.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 4.0e-33 146.4 337 41.2
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.5e-32 144.4 265 40.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.9e-31 139.4 208 48.1
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 3.3e-27 126.7 302 35.4
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.6e-26 124.4 200 43.0
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.0e-25 119.8 149 51.7
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-24 117.9 228 39.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-24 117.9 234 39.3
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-21 108.2 106 58.5
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.3e-20 104.0 110 56.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 6.7e-20 102.4 178 43.3
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 9.6e-19 98.6 192 35.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 8.1e-18 95.5 171 40.4
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.6e-16 90.5 117 50.4
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 7.1e-14 82.4 58 63.8
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 5.3e-09 66.2 66 62.1


User provided reference genes

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