Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p08280 Brassica napus HOM05D010646 ORTHO05D001770 3.5e-109 398.3 196 100.0
BolC3t13336H Brassica oleracea HOM05D010646 ORTHO05D001770 8.5e-108 393.7 197 99.5
BcaB01g06253 Brassica carinata HOM05D010646 ORTHO05D001770 4.1e-86 321.6 217 79.3
BolC3t12591H Brassica oleracea HOM05D010646 ORTHO05D001770 1.7e-84 316.2 169 91.7
A03p00080 Brassica napus HOM05D010646 ORTHO05D001770 1.1e-83 313.5 169 91.1
BraA03t09397Z Brassica rapa HOM05D010646 ORTHO05D001770 4.3e-83 311.6 169 90.5
C03p00220 Brassica napus HOM05D010646 ORTHO05D001770 8.9e-81 303.9 162 91.4
BcaC06g31954 Brassica carinata HOM05D010646 ORTHO05D001770 4.0e-65 251.9 170 78.2
C09p74720 Brassica napus HOM05D010646 ORTHO05D001770 8.3e-63 244.2 170 76.5
BcaNung03299 Brassica carinata HOM05D010646 ORTHO05D001770 2.4e-62 242.7 170 75.9
BolC9t60204H Brassica oleracea HOM05D010646 ORTHO05D001770 2.4e-62 242.7 170 75.9
BcaNung03304 Brassica carinata HOM05D000389 ORTHO05D000287 1.0e-60 237.3 170 75.9
Carub.0006s0004 Capsella rubella HOM05D010646 ORTHO05D001770 8.1e-58 227.6 189 68.3
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 5.2e-57 224.9 174 70.1
Thhalv10014604m.g Eutrema salsugineum HOM05D010646 ORTHO05D001770 3.4e-56 222.2 169 70.4
AL6G10240 Arabidopsis lyrata HOM05D010646 ORTHO05D001770 4.2e-54 215.3 177 67.2
BcaC01g05778 Brassica carinata HOM05D010646 ORTHO05D001770 6.6e-52 208.0 170 69.4
CARHR212150 Cardamine hirsuta HOM05D010646 ORTHO05D001770 2.4e-49 199.5 175 65.1
Sp6g41040 Schrenkiella parvula HOM05D010646 ORTHO05D001770 1.5e-24 117.1 82 74.4
BolC3t14631H Brassica oleracea HOM05D010646 ORTHO05D001770 2.6e-24 116.3 82 73.2
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 2.3e-12 76.6 113 41.6
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 5.1e-12 75.5 111 40.5
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 5.7e-11 72.0 109 43.1
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 5.7e-11 72.0 109 43.1
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 5.7e-11 72.0 109 43.1
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 7.4e-11 71.6 140 40.0
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.3e-10 70.9 138 37.7
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.2e-10 70.1 161 35.4
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.8e-10 69.7 113 40.7
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 3.7e-10 69.3 86 48.8
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 4.8e-10 68.9 138 39.1
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 4.8e-10 68.9 163 35.6
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 6.3e-10 68.6 86 48.8
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.4e-09 67.4 110 40.0
SalBow3G1041 Salvia bowleyana HOM05D002277 ORTHO05D001770 1.4e-09 67.4 84 46.4
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 1.8e-09 67.0 129 35.7
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.8e-09 67.0 102 42.2
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.8e-09 67.0 128 35.9
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.1e-09 66.2 173 31.2
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 3.1e-09 66.2 143 35.0
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.1e-09 66.2 160 32.5
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 3.1e-09 66.2 82 47.6
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 3.1e-09 66.2 84 48.8
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 4.1e-09 65.9 82 47.6
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 4.1e-09 65.9 88 46.6
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.1e-09 65.9 136 36.0
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 5.3e-09 65.5 96 44.8
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.2e-08 64.3 112 39.3
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 1.2e-08 64.3 114 40.4
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 1.2e-08 64.3 85 45.9
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.5e-08 63.9 91 40.7
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.5e-08 63.9 178 35.4
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 1.5e-08 63.9 198 31.8
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.0e-08 63.5 88 45.5
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 2.0e-08 63.5 87 47.1
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.0e-08 63.5 91 42.9
THA.LOC104816170 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 2.0e-08 63.5 154 35.1
TWI77G0059 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 2.0e-08 63.5 104 45.2
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.6e-08 63.2 140 32.9
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.6e-08 63.2 72 51.4
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.6e-08 63.2 66 51.5
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.6e-08 63.2 146 33.6
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 2.6e-08 63.2 151 40.4
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 2.6e-08 63.2 147 36.7
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.4e-08 62.8 60 51.7
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 3.4e-08 62.8 89 46.1
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.4e-08 62.8 72 45.8
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 3.4e-08 62.8 99 41.4
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.4e-08 62.8 104 42.3
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 3.4e-08 62.8 104 42.3
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 4.5e-08 62.4 105 41.9
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 4.5e-08 62.4 61 57.4
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 4.5e-08 62.4 71 49.3
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 5.9e-08 62.0 73 50.7
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 5.9e-08 62.0 89 39.3
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 7.7e-08 61.6 185 30.8
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.7e-08 61.6 108 38.0
PGR031G1525 Punica granatum HOM05D002277 ORTHO05D001770 7.7e-08 61.6 136 33.8
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 7.7e-08 61.6 168 30.4
unitig_46.g18741 Utricularia gibba HOM05D002277 ORTHO05D001770 7.7e-08 61.6 87 47.1
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.0e-07 61.2 65 49.2
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.0e-07 61.2 74 43.2
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 1.0e-07 61.2 99 44.4
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 1.3e-07 60.8 87 42.5
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 1.7e-07 60.5 96 46.9
Zm00001eb350250 Zea mays HOM05D002277 ORTHO05D001770 1.7e-07 60.5 46 63.0
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.2e-07 60.1 160 30.0
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.2e-07 60.1 197 31.5
Solyc06g050370.1 Solanum lycopersicum HOM05D002277 ORTHO05D001770 2.2e-07 60.1 45 64.4
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.9e-07 59.7 92 42.4
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 2.9e-07 59.7 89 40.4
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 2.9e-07 59.7 123 35.8
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 3.8e-07 59.3 68 45.6
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 3.8e-07 59.3 72 48.6
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.8e-07 59.3 56 51.8
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 3.8e-07 59.3 96 39.6
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 3.8e-07 59.3 119 37.8
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 3.8e-07 59.3 127 36.2
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 5.0e-07 58.9 85 42.4
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 5.0e-07 58.9 170 34.7
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 6.5e-07 58.5 49 59.2
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.5e-07 58.5 91 40.7
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.5e-07 58.5 91 40.7
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 6.5e-07 58.5 92 42.4
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.5e-07 58.5 91 40.7
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 6.5e-07 58.5 87 42.5
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 6.5e-07 58.5 83 43.4
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 6.5e-07 58.5 45 62.2
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 6.5e-07 58.5 104 40.4
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 8.5e-07 58.2 133 37.6
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.5e-07 58.2 87 42.5
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.5e-07 58.2 88 46.6
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.1e-06 57.8 102 38.2
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 1.1e-06 57.8 104 37.5
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.4e-06 57.4 79 44.3
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 1.4e-06 57.4 104 37.5
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.9e-06 57.0 107 44.9
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 1.9e-06 57.0 64 46.9
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 1.9e-06 57.0 95 40.0
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 1.9e-06 57.0 114 35.1
HPP92_019747 Vanilla planifolia HOM05D002277 ORTHO05D001770 1.9e-06 57.0 85 45.9
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 2.5e-06 56.6 68 44.1
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 3.2e-06 56.2 71 43.7
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.2e-06 56.2 60 46.7
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.2e-06 56.2 120 32.5
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 3.2e-06 56.2 159 29.6
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 3.2e-06 56.2 82 40.2
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 4.2e-06 55.8 104 43.3
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 4.2e-06 55.8 75 44.0
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 4.2e-06 55.8 87 41.4
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 4.2e-06 55.8 97 38.1
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 4.2e-06 55.8 85 37.6
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 5.5e-06 55.5 100 39.0
Nitab4.5_0007794g0020 Nicotiana tabacum HOM05D002277 ORTHO05D001770 5.5e-06 55.5 66 48.5
Os05g0165500 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 5.5e-06 55.5 51 52.9
unitig_37.g12468 Utricularia gibba HOM05D010646 ORTHO05D001770 5.5e-06 55.5 42 66.7
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 7.2e-06 55.1 91 38.5
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 7.2e-06 55.1 87 41.4
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 7.2e-06 55.1 64 45.3
SGA_v2.0_scaffold60G20916 Striga asiatica HOM05D002277 ORTHO05D001770 7.2e-06 55.1 63 49.2
Zm00001eb345950 Zea mays HOM05D002277 ORTHO05D001770 7.2e-06 55.1 78 39.7
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 9.4e-06 54.7 68 45.6
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 9.4e-06 54.7 74 40.5
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 9.4e-06 54.7 74 40.5
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 9.4e-06 54.7 74 40.5
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 9.4e-06 54.7 74 40.5
CARHR166420 Cardamine hirsuta HOM05D010959 ORTHO05D001770 9.4e-06 54.7 99 40.4
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 9.4e-06 54.7 104 41.3
Oeu011363.1 Olea europaea HOM05D002277 ORTHO05D001770 9.4e-06 54.7 93 44.1
Os01g0166500 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 9.4e-06 54.7 42 59.5


User provided reference genes

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