Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 6.7e-31 136.7 70 100.0
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 6.7e-31 136.7 70 100.0
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 2.4e-20 101.7 53 98.1
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 2.4e-20 101.7 53 98.1
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 4.7e-16 87.4 53 86.8
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 2.3e-15 85.1 53 84.9
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 2.3e-15 85.1 53 84.9
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 3.3e-14 81.3 54 81.5
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 5.7e-14 80.5 48 89.6
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 5.7e-14 80.5 48 89.6
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 5.7e-14 80.5 48 89.6
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 5.7e-14 80.5 48 89.6
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 5.7e-14 80.5 53 81.1
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 1.7e-13 79.0 54 77.8
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 8.2e-13 76.6 54 75.9
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 8.2e-13 76.6 54 75.9
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 2.4e-12 75.1 54 75.9
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 3.1e-12 74.7 54 74.1
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 5.3e-12 73.9 57 73.7
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 7.0e-12 73.6 54 74.1
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.0e-12 73.6 54 74.1
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 7.0e-12 73.6 54 74.1
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 9.1e-12 73.2 54 74.1
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.2e-11 72.8 54 72.2
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 1.2e-11 72.8 55 74.5
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 1.6e-11 72.4 54 72.2
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.6e-11 71.6 54 72.2
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 2.6e-11 71.6 54 74.1
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 3.5e-11 71.2 54 72.2
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.5e-11 71.2 54 70.4
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 5.9e-11 70.5 54 70.4
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 5.9e-11 70.5 54 70.4
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.9e-11 70.5 54 74.1
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 5.9e-11 70.5 54 72.2
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 1.0e-10 69.7 54 74.1
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.0e-10 69.7 54 72.2
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 72.2
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 72.2
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 70.4
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 68.5
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 72.2
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 72.2
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 1.3e-10 69.3 54 72.2
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 68.5
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 68.5
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 68.5
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 68.5
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 68.5
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 72.2
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 70.4
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.7e-10 68.9 54 68.5
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.2e-10 68.6 54 70.4
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.8e-10 67.8 54 70.4
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 3.8e-10 67.8 54 70.4
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.8e-10 67.8 54 70.4
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 3.8e-10 67.8 54 70.4
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.8e-10 67.8 59 64.4
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 3.8e-10 67.8 54 70.4
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 66.7
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 66.7
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 70.4
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 70.4
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 68.5
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 72.2
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 68.5
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 70.4
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 5.0e-10 67.4 54 70.4
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 5.0e-10 67.4 59 64.4
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 6.5e-10 67.0 54 68.5
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 8.5e-10 66.6 52 71.2
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 1.5e-09 65.9 54 66.7
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 1.5e-09 65.9 54 66.7
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.5e-09 65.9 54 68.5
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.5e-09 65.9 54 70.4
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.5e-09 65.9 54 70.4
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.9e-09 65.5 51 68.6
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 1.9e-09 65.5 54 70.4
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.9e-09 65.5 54 68.5
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 2.5e-09 65.1 58 62.1
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.5e-09 65.1 54 68.5
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 2.5e-09 65.1 54 66.7
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.5e-09 65.1 54 68.5
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.5e-09 65.1 54 68.5
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.5e-09 65.1 54 64.8
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 3.2e-09 64.7 54 66.7
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 3.2e-09 64.7 54 68.5
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 3.2e-09 64.7 54 68.5
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 4.2e-09 64.3 54 70.4
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 4.2e-09 64.3 54 66.7
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 4.2e-09 64.3 54 66.7
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 5.5e-09 63.9 53 64.2
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 5.5e-09 63.9 54 68.5
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.5e-09 63.9 54 68.5
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 5.5e-09 63.9 57 63.2
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 5.5e-09 63.9 53 69.8
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 5.5e-09 63.9 54 66.7
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 7.2e-09 63.5 54 64.8
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 9.4e-09 63.2 54 66.7
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 9.4e-09 63.2 56 64.3
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 9.4e-09 63.2 53 69.8
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.6e-08 62.4 54 63.0
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 1.6e-08 62.4 54 64.8
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 1.6e-08 62.4 53 64.2
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 2.1e-08 62.0 42 78.6
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 2.1e-08 62.0 64 57.8
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 2.1e-08 62.0 67 56.7
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 3.6e-08 61.2 41 78.0
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 4.7e-08 60.8 41 73.2
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 4.7e-08 60.8 38 84.2
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 4.7e-08 60.8 58 63.8
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 4.7e-08 60.8 53 60.4
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 4.7e-08 60.8 72 54.2
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 6.1e-08 60.5 39 76.9
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 6.1e-08 60.5 53 62.3
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 8.0e-08 60.1 68 51.5
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 8.0e-08 60.1 35 85.7
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 1.0e-07 59.7 42 71.4
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.0e-07 59.7 38 81.6
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 1.0e-07 59.7 39 76.9
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 1.0e-07 59.7 44 65.9
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.0e-07 59.7 52 63.5
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.4e-07 59.3 45 66.7
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.4e-07 59.3 40 80.0
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.4e-07 59.3 54 59.3
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.8e-07 58.9 39 79.5
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.8e-07 58.9 54 64.8
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 2.3e-07 58.5 38 78.9
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 4.0e-07 57.8 39 71.8
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 4.0e-07 57.8 38 78.9
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 4.0e-07 57.8 54 64.8
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 4.0e-07 57.8 42 73.8
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 4.0e-07 57.8 42 71.4
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 4.0e-07 57.8 45 68.9
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 5.2e-07 57.4 42 73.8
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 5.2e-07 57.4 39 71.8
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 5.2e-07 57.4 38 76.3
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 6.7e-07 57.0 38 76.3
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 8.8e-07 56.6 39 74.4
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 1.5e-06 55.8 36 77.8
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.6e-06 55.1 39 69.2
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 2.6e-06 55.1 39 74.4
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 5.7e-06 53.9 53 56.6
AUR62010366 Chenopodium quinoa HOM05D004818 ORTHO05D005444 7.5e-06 53.5 34 79.4
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 9.7e-06 53.1 78 47.4
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 9.7e-06 53.1 45 64.4


User provided reference genes

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