Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 3.8e-146 521.5 277 100.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 3.8e-146 521.5 277 100.0
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-146 521.5 277 100.0
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-142 506.9 277 97.1
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.4e-140 502.3 281 95.7
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.5e-129 466.5 277 90.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-129 466.1 277 90.6
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.9e-129 466.1 277 90.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 3.3e-129 465.3 277 90.3
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.3e-129 464.9 277 90.6
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 7.2e-129 464.2 277 90.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-128 463.4 277 89.9
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-128 463.0 277 89.9
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.5e-126 456.4 277 87.7
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.0e-126 456.1 277 87.7
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 2.2e-125 452.6 277 87.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 8.3e-125 450.7 277 87.0
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 4.1e-116 421.8 319 74.9
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.1e-112 409.5 279 78.5
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 76.3
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.6e-110 402.5 276 76.1
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 5.8e-110 401.4 277 76.5
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 76.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.7e-109 399.8 274 75.2
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.9e-109 398.3 277 75.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 8.3e-109 397.5 274 76.6
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.4e-108 396.0 272 77.2
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.1e-108 395.2 276 75.0
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 4.1e-108 395.2 274 75.5
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 5.4e-108 394.8 274 75.9
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 7.1e-108 394.4 277 74.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.2e-107 393.7 277 74.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.7e-107 392.5 276 74.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.7e-107 392.5 272 76.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 4.6e-107 391.7 277 74.0
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.6e-107 391.7 277 73.3
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 7.8e-107 391.0 277 74.0
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.3e-106 390.2 277 73.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 75.5
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 74.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.7e-106 389.8 274 74.5
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-106 389.8 277 73.6
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.3e-106 389.4 274 74.1
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.0e-106 389.0 274 75.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.9e-106 388.7 277 74.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 5.1e-106 388.3 274 74.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.1e-106 388.3 277 72.9
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.6e-106 387.9 277 72.9
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.6e-106 387.9 277 72.9
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 6.6e-106 387.9 274 74.5
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 8.6e-106 387.5 269 76.2
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 8.6e-106 387.5 277 74.0
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.5e-105 386.7 274 73.7
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 3.3e-105 385.6 277 73.6
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 4.3e-105 385.2 277 73.6
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 5.6e-105 384.8 274 74.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 9.5e-105 384.0 277 73.6
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.2e-104 383.6 274 74.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.6e-104 383.3 277 72.2
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.1e-104 382.9 277 72.6
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.1e-104 382.9 262 76.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.1e-104 380.9 288 70.5
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-103 380.6 277 72.9
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.8e-103 379.8 274 71.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.1e-103 379.0 270 74.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.1e-103 379.0 272 73.9
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 3.1e-103 379.0 272 73.9
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 8.9e-103 377.5 270 73.7
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 8.9e-103 377.5 272 74.3
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 8.9e-103 377.5 274 73.4
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.5e-102 376.7 272 76.5
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.5e-102 376.7 272 72.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 3.4e-102 375.6 272 72.4
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 7.6e-102 374.4 273 72.9
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 7.6e-102 374.4 270 73.0
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.2e-101 372.9 272 72.4
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.9e-101 372.5 272 72.8
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.7e-101 372.1 272 72.8
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 4.9e-101 371.7 272 72.4
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 6.4e-101 371.3 269 72.1
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.1e-100 370.5 272 73.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.4e-100 370.2 272 72.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.4e-100 369.4 299 68.6
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.2e-100 369.0 272 72.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 4.1e-100 368.6 272 71.7
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 4.1e-100 368.6 272 71.7
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.6e-99 366.7 272 70.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.6e-99 366.7 272 71.0
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.1e-99 366.3 283 70.3
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.5e-99 365.5 268 70.5
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.5e-99 365.5 271 70.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.6e-99 365.2 272 71.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 6.0e-99 364.8 269 72.9
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 6.6e-98 361.3 289 68.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 8.6e-98 360.9 272 69.5
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.5e-97 359.4 273 70.0
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.3e-97 359.0 276 69.2
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.3e-97 357.8 273 69.2
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 9.6e-97 357.5 272 71.0
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.2e-96 354.8 286 67.1
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-95 354.0 255 76.1
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.8e-95 351.3 272 71.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 8.9e-95 350.9 269 69.9
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.6e-94 349.4 268 68.3
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.8e-94 348.2 277 66.4
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 3.8e-93 345.5 269 66.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.9e-92 343.2 272 69.5
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-91 339.3 282 68.8
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.8e-91 337.8 335 58.2
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-90 336.7 282 68.1
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-90 336.7 255 74.1
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.5e-89 333.6 262 66.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-89 333.2 258 73.6
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 3.3e-89 332.4 259 73.7
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-88 330.5 282 67.7
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.8e-88 329.3 322 59.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 4.8e-88 328.6 248 71.4
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 5.3e-87 325.1 282 67.4
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 6.9e-87 324.7 365 53.2
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.5e-86 323.6 267 64.8
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-86 322.0 282 67.0
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.4e-84 317.0 257 65.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.4e-84 316.2 267 62.9
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 4.3e-81 305.4 270 57.8
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.3e-80 303.9 275 57.1
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.4e-79 300.4 266 59.8
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 5.3e-79 298.5 226 73.9
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 5.3e-79 298.5 221 69.7
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.2e-78 297.4 210 73.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.7e-77 293.5 263 58.6
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 6.4e-77 291.6 263 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.4e-77 291.2 263 58.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-75 286.2 256 65.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 4.6e-75 285.4 281 61.9
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 5.6e-73 278.5 262 57.3
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 2.1e-72 276.6 274 55.1
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.8e-72 276.2 483 40.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.1e-72 274.6 483 40.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 7.6e-70 268.1 264 54.5
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-65 251.9 267 57.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 5.7e-65 251.9 164 78.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.7e-64 249.2 258 57.4
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 8.2e-64 248.1 252 59.1
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.2e-61 240.0 268 52.6
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.2e-59 234.2 300 50.7
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 3.6e-59 232.6 131 93.9
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 9.0e-55 218.0 140 78.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.8e-47 193.7 270 46.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 1.2e-43 181.0 414 35.0
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 6.1e-43 178.7 136 71.3
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 3.0e-42 176.4 131 71.8
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 3.7e-40 169.5 138 62.3
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.2e-40 168.3 148 62.8
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.6e-38 163.3 228 46.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.5e-38 162.5 164 59.1
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.2e-36 155.2 96 82.3
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.4e-36 154.8 120 71.7
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.1e-35 153.7 130 65.4
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.0e-29 134.8 261 36.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 6.1e-27 125.6 143 50.3
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 8.8e-26 121.7 266 32.3
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 2.8e-24 116.7 294 29.6
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 6.3e-24 115.5 111 62.2
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.2e-21 107.1 73 79.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.2e-20 103.2 150 46.0
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.2e-19 101.3 139 44.6
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-18 97.8 52 98.1
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-18 97.8 95 56.8
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-18 97.4 52 96.2
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-18 97.4 52 96.2
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-18 96.3 52 96.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-17 94.0 52 94.2
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 7.5e-17 92.0 50 94.0
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 4.9e-16 89.4 69 65.2
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-15 87.0 59 76.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.1e-15 86.7 71 63.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.4e-15 85.9 72 59.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.4e-15 85.9 72 59.7
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.2e-14 84.7 72 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-13 81.3 72 56.9
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.9e-13 80.1 53 73.6
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.9e-13 80.1 68 60.3
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 7.5e-09 65.5 52 59.6
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.4e-07 61.2 40 77.5
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 3.5e-06 56.6 57 56.1


User provided reference genes

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