Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 2.4e-63 245.4 125 100.0
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 2.4e-63 245.4 125 100.0
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 2.4e-63 245.4 125 100.0
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 1.7e-61 239.2 125 96.8
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 1.7e-61 239.2 125 96.8
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 1.1e-60 236.5 125 96.0
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 7.2e-60 233.8 125 94.4
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 7.2e-60 233.8 125 94.4
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 9.4e-60 233.4 125 94.4
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 9.4e-60 233.4 125 94.4
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 9.4e-60 233.4 125 94.4
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 3.6e-59 231.5 125 92.8
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 1.4e-58 229.6 125 91.2
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 2.3e-58 228.8 125 92.0
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 3.9e-58 228.0 120 95.8
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 8.8e-58 226.9 125 91.2
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 8.8e-58 226.9 125 91.2
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 2.8e-56 221.9 125 88.8
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 1.2e-54 216.5 118 92.4
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 9.4e-52 206.8 125 81.6
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 2.0e-49 199.1 108 91.7
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 4.8e-48 194.5 108 89.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 1.7e-45 186.0 124 72.6
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 2.2e-45 185.7 124 71.8
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 3.8e-45 184.9 124 75.0
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 5.0e-45 184.5 118 75.4
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 5.0e-45 184.5 125 72.0
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 6.5e-45 184.1 118 74.6
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 8.5e-45 183.7 125 71.2
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 1.5e-44 183.0 124 69.4
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 1.5e-44 183.0 124 69.4
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 3.2e-44 181.8 125 71.2
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 3.2e-44 181.8 119 73.9
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 5.5e-44 181.0 125 72.8
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 7.2e-44 180.6 125 70.4
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 7.2e-44 180.6 125 72.8
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 72.0
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 9.4e-44 180.3 125 72.0
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 2.1e-43 179.1 119 72.3
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 2.7e-43 178.7 125 66.4
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 8.0e-43 177.2 123 71.5
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.0e-42 176.8 125 68.0
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 1.0e-42 176.8 125 68.8
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 3.0e-42 175.3 125 68.8
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 3.0e-42 175.3 123 70.7
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 4.0e-42 174.9 121 71.1
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 5.2e-42 174.5 124 66.9
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 8.8e-42 173.7 119 68.9
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 8.8e-42 173.7 124 69.4
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 8.8e-42 173.7 118 71.2
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.5e-41 172.9 120 71.7
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.5e-41 172.9 125 68.0
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 1.5e-41 172.9 125 66.4
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 2.0e-41 172.6 119 69.7
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 2.0e-41 172.6 119 72.3
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.4e-41 171.4 120 70.8
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.4e-41 171.4 120 70.8
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 4.4e-41 171.4 119 68.9
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 5.7e-41 171.0 125 66.4
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 7.5e-41 170.6 119 68.9
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 7.5e-41 170.6 125 68.8
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.7e-40 169.5 142 62.7
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 1.7e-40 169.5 124 69.4
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 2.8e-40 168.7 123 66.7
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 2.8e-40 168.7 118 71.2
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 2.8e-40 168.7 118 72.0
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 2.8e-40 168.7 125 63.2
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 4.8e-40 167.9 125 67.2
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 8.3e-40 167.2 119 69.7
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 8.3e-40 167.2 125 65.6
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 1.4e-39 166.4 118 70.3
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 1.4e-39 166.4 125 65.6
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.4e-39 166.4 118 70.3
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 1.4e-39 166.4 117 67.5
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 1.4e-39 166.4 123 64.2
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 4.1e-39 164.9 113 69.9
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 1.2e-38 163.3 120 70.0
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 1.6e-38 162.9 124 64.5
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 2.7e-38 162.2 120 65.0
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 3.5e-38 161.8 117 66.7
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 4.5e-38 161.4 118 70.3
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 5.9e-38 161.0 125 63.2
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 1.0e-37 160.2 124 62.1
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 1.3e-37 159.8 124 63.7
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 1.7e-37 159.5 118 69.5
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.7e-37 159.5 120 67.5
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 5.0e-37 157.9 118 68.6
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 6.5e-37 157.5 120 65.8
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 2.5e-36 155.6 105 70.5
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.2e-35 153.3 105 70.5
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 1.6e-35 152.9 121 58.7
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.8e-35 152.1 106 71.7
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 4.7e-35 151.4 105 69.5
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 4.7e-35 151.4 118 61.9
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 8.0e-35 150.6 147 54.4
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 8.0e-35 150.6 119 60.5
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 1.2e-33 146.7 107 66.4
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 1.5e-33 146.4 135 59.3
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 2.6e-33 145.6 113 63.7
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.6e-33 145.6 145 53.8
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 4.9e-32 141.4 129 56.6
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.1e-31 140.2 119 58.0
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 1.2e-30 136.7 118 61.0
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 1.6e-30 136.3 131 55.7
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 1.6e-30 136.3 101 65.3
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 7.8e-30 134.0 127 51.2
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.7e-29 132.9 119 58.8
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 3.8e-29 131.7 217 38.7
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 8.6e-29 130.6 125 55.2
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 8.6e-29 130.6 89 67.4
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 1.5e-28 129.8 88 72.7
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 7.3e-28 127.5 90 73.3
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 3.0e-26 122.1 106 59.4
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 1.7e-24 116.3 105 55.2
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 4.9e-24 114.8 68 77.9
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 8.3e-24 114.0 72 75.0
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 1.9e-23 112.8 81 69.1
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 4.1e-23 111.7 113 52.2
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 2.3e-21 105.9 74 64.9
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 7.3e-20 100.9 74 67.6
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 8.0e-19 97.4 121 43.0
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 5.8e-17 91.3 60 73.3
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 1.3e-16 90.1 131 46.6
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.3e-16 90.1 117 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 3.7e-16 88.6 81 48.1
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 1.2e-14 83.6 68 58.8
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.7e-14 82.4 95 48.4
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 4.3e-12 75.1 45 75.6
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 8.1e-11 70.9 64 46.9


User provided reference genes

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