Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 2.4e-127 459.1 283 100.0
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.6e-123 446.4 284 98.9
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-115 419.9 283 92.9
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 8.0e-115 417.5 283 92.6
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-97 359.0 276 87.3
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 5.5e-92 341.7 275 81.1
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.5e-89 333.6 283 72.8
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.6e-89 332.8 236 83.5
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 4.1e-87 325.5 272 76.8
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 7.0e-87 324.7 293 74.1
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 4.5e-86 322.0 270 77.4
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 6.6e-85 318.2 303 72.3
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 4.3e-84 315.5 298 72.1
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 5.6e-84 315.1 240 81.7
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.6e-84 315.1 232 77.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 9.5e-84 314.3 268 75.0
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.6e-83 313.5 279 76.0
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.1e-83 313.2 272 75.0
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 9.5e-68 261.2 293 60.4
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-66 256.5 206 80.1
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 7.6e-57 224.9 232 55.6
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 7.6e-57 224.9 236 63.6
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 6.4e-56 221.9 225 58.2
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.1e-55 221.1 292 52.4
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 3.2e-55 219.5 287 53.0
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 4.1e-55 219.2 227 55.9
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 7.1e-55 218.4 230 53.5
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 1.6e-54 217.2 211 59.2
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 7.8e-54 214.9 128 84.4
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 2.3e-53 213.4 232 58.2
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 2.3e-53 213.4 234 58.1
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 8.7e-53 211.5 240 58.3
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.5e-52 210.7 213 61.0
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.9e-52 210.3 287 50.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 2.5e-52 209.9 220 58.2
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.3e-52 209.5 220 60.9
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.3e-52 209.5 237 57.8
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 9.6e-52 208.0 231 58.9
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.2e-51 207.6 221 57.0
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.6e-51 207.2 208 55.3
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.1e-51 206.8 224 56.7
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 2.8e-51 206.5 227 55.1
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 2.8e-51 206.5 235 58.3
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 3.6e-51 206.1 216 60.6
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 6.2e-51 205.3 234 57.3
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 8.1e-51 204.9 212 61.8
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.1e-50 204.5 217 53.0
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.4e-50 203.4 275 47.6
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 2.4e-50 203.4 227 52.9
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 3.1e-50 203.0 222 51.8
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 4.0e-50 202.6 215 56.3
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 9.0e-50 201.4 234 51.3
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 9.0e-50 201.4 223 59.2
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 9.0e-50 201.4 207 64.3
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.5e-49 200.7 232 56.5
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 1.5e-49 200.7 236 49.2
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.0e-49 200.3 244 48.4
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.4e-49 199.5 212 55.2
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 4.4e-49 199.1 287 45.3
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 7.6e-49 198.4 229 56.3
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 7.6e-49 198.4 206 51.0
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 7.6e-49 198.4 236 58.1
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 9.9e-49 198.0 224 57.1
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 9.9e-49 198.0 233 59.7
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.7e-48 197.2 233 52.8
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 1.7e-48 197.2 217 56.7
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.7e-48 197.2 281 44.8
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.9e-48 196.4 205 54.6
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 3.8e-48 196.1 221 57.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 3.8e-48 196.1 217 60.4
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 6.4e-48 195.3 204 54.9
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.1e-47 194.5 221 56.6
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.1e-47 194.5 221 57.0
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.1e-47 194.5 292 51.0
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.4e-47 194.1 281 54.8
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.4e-47 194.1 203 54.7
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 1.9e-47 193.7 208 60.1
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 3.2e-47 193.0 237 58.2
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.2e-47 193.0 223 58.7
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.2e-47 193.0 246 56.1
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 3.2e-47 193.0 235 57.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 4.2e-47 192.6 236 49.6
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 5.4e-47 192.2 270 54.1
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 7.1e-47 191.8 203 59.1
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.6e-46 190.7 279 54.1
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 2.7e-46 189.9 220 48.2
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.6e-46 189.1 221 58.4
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 1.3e-45 187.6 227 52.4
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 2.3e-45 186.8 270 56.3
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 2.3e-45 186.8 278 48.9
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.0e-45 186.4 297 47.8
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.1e-45 185.7 217 53.0
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 5.1e-45 185.7 213 55.9
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 7.3e-44 181.8 213 56.3
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 9.6e-44 181.4 281 55.5
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 9.6e-44 181.4 283 49.8
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 3.6e-43 179.5 245 53.5
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 9.0e-42 174.9 271 46.9
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 2.6e-41 173.3 239 52.7
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.4e-41 172.9 222 50.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 5.8e-41 172.2 198 46.0
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.9e-40 169.9 112 70.5
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.9e-39 167.2 223 46.2
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 3.2e-39 166.4 217 47.9
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 5.4e-39 165.6 223 44.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.2e-38 164.5 177 50.8
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.3e-37 161.0 238 43.3
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.3e-37 160.2 106 68.9
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 6.7e-37 158.7 115 65.2
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 8.7e-37 158.3 121 62.8
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 4.8e-35 152.5 119 61.3
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 6.2e-35 152.1 178 59.0
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.1e-34 151.4 130 57.7
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.8e-34 150.6 101 68.3
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.8e-34 150.6 199 53.8
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 2.4e-34 150.2 121 59.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.0e-33 147.1 111 63.1
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-33 146.7 128 56.2
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.4e-33 146.4 136 55.9
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 4.5e-33 146.0 107 62.6
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 4.5e-33 146.0 266 46.2
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.8e-33 145.6 215 42.8
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.3e-32 144.4 120 61.7
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 4.9e-32 142.5 142 54.9
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.9e-31 140.6 128 53.9
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 5.5e-31 139.0 102 62.7
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.2e-30 137.9 115 57.4
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 3.5e-30 136.3 129 55.0
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.0e-29 134.8 102 59.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.8e-29 134.0 102 59.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.8e-29 134.0 102 59.8
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.9e-29 132.9 102 59.8
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.7e-27 126.3 91 63.7
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 3.1e-26 123.2 98 57.1
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 4.0e-26 122.9 122 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 1.5e-25 120.9 198 42.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-25 120.9 85 63.5
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.0e-25 120.6 264 40.5
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 7.6e-25 118.6 241 42.7
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.0e-24 118.2 104 55.8
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.3e-24 117.9 86 60.5
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 2.2e-24 117.1 86 62.8
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 4.9e-24 115.9 91 57.1
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 7.9e-22 108.6 86 59.3
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 3.3e-20 103.2 131 46.6
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 5.7e-20 102.4 219 34.2
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 3.7e-19 99.8 277 35.7
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.7e-19 99.8 274 36.9
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 3.1e-18 96.7 215 30.7
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.0e-18 95.1 79 58.2
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.8e-13 80.9 113 42.5
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.3e-08 64.7 307 28.3
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.6e-06 57.8 77 40.3
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 3.6e-06 56.6 154 30.5


User provided reference genes

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