Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 3.5e-128 461.8 266 100.0
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 3.7e-122 441.8 266 96.6
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 3.8e-111 405.2 267 88.8
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.5e-107 393.3 267 90.3
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.8e-101 372.5 266 75.2
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.4e-97 359.4 266 72.6
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.4e-91 338.6 267 78.3
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.2e-90 336.3 266 78.6
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.2e-90 336.3 266 68.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 5.4e-89 331.6 269 77.7
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.1e-86 323.9 266 67.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-86 323.9 269 77.3
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-85 320.5 267 68.2
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.7e-85 318.5 266 66.9
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 6.4e-82 308.1 268 77.6
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.1e-80 303.1 270 73.0
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 3.5e-80 302.4 272 67.3
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 4.6e-80 302.0 272 66.9
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 4.6e-80 302.0 272 67.6
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.3e-79 300.4 270 72.2
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-79 299.7 272 66.5
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.3e-79 299.7 272 66.5
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.1e-79 298.5 264 65.2
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.2e-77 293.9 272 61.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.8e-76 290.0 255 68.6
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.2e-74 283.1 251 64.1
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-65 253.8 271 67.5
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.1e-63 245.4 211 67.3
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 8.1e-61 238.0 247 54.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.2e-59 234.2 250 51.2
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.0e-59 233.4 261 51.0
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 9.9e-59 231.1 179 60.9
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.7e-58 230.3 212 63.2
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.9e-58 229.6 260 49.2
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 4.9e-58 228.8 272 49.3
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 6.4e-58 228.4 255 51.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.1e-57 227.6 238 50.8
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.9e-57 226.9 269 48.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.4e-57 226.5 252 50.4
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.4e-57 226.5 254 50.4
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 5.4e-57 225.3 253 51.4
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.7e-56 223.0 272 54.4
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 4.6e-56 222.2 269 49.4
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 6.0e-56 221.9 276 50.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 7.9e-56 221.5 183 60.7
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.3e-55 220.7 178 60.7
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.8e-55 220.3 254 49.2
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.7e-55 218.4 253 47.8
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 8.7e-55 218.0 252 48.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.1e-54 217.6 231 51.5
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.5e-54 217.2 231 53.2
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.9e-54 216.9 254 48.8
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 5.6e-54 215.3 277 45.8
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.4e-54 214.9 249 48.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.6e-53 213.8 256 46.5
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.8e-53 212.2 261 45.6
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 8.1e-53 211.5 255 46.3
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.1e-52 211.1 265 47.2
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.4e-52 210.7 269 46.8
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.4e-52 210.7 232 50.9
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 2.4e-52 209.9 187 54.0
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 2.4e-52 209.9 187 54.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.1e-52 209.5 208 53.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.1e-52 209.5 269 46.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.1e-52 209.5 269 52.0
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 3.1e-52 209.5 261 46.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 3.1e-52 209.5 266 47.4
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.1e-52 209.5 230 50.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.0e-52 209.1 269 52.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 4.0e-52 209.1 230 49.6
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.3e-52 208.8 263 46.4
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 5.3e-52 208.8 238 49.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.9e-52 208.4 198 55.6
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.2e-51 207.6 206 52.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.2e-51 207.6 155 63.2
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 1.2e-51 207.6 251 55.4
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.2e-51 207.6 177 62.1
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.5e-51 207.2 256 46.9
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.5e-51 207.2 263 45.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.6e-51 206.5 255 47.5
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.6e-51 206.5 198 55.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.5e-51 205.7 198 55.1
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.5e-51 205.7 155 62.6
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 7.6e-51 204.9 160 61.9
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 7.6e-51 204.9 183 56.8
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.9e-51 204.5 179 58.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.7e-50 203.8 262 56.5
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-50 203.4 195 54.9
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.2e-50 203.4 260 48.8
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 4.9e-50 202.2 273 54.2
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 4.9e-50 202.2 192 52.6
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 6.4e-50 201.8 233 53.2
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.9e-49 200.3 254 47.2
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.4e-49 199.9 274 42.0
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.2e-49 199.5 188 56.4
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.2e-49 199.1 274 41.6
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 9.3e-49 198.0 243 47.3
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 9.3e-49 198.0 162 59.3
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 9.3e-49 198.0 259 44.8
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.2e-48 197.6 274 42.0
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.1e-48 196.8 141 66.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.5e-48 196.1 166 60.2
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 6.0e-48 195.3 160 61.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-47 194.1 245 48.6
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.3e-47 194.1 284 43.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.8e-47 193.7 236 47.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 6.7e-47 191.8 231 46.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.5e-46 190.7 180 51.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.5e-46 189.9 249 43.4
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 3.3e-46 189.5 156 59.6
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 5.6e-46 188.7 236 43.6
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.6e-45 187.2 243 44.9
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.4e-44 184.1 228 46.9
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 2.4e-44 183.3 180 55.0
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.9e-44 181.8 189 50.3
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.5e-43 180.6 173 53.2
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 3.4e-43 179.5 165 53.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 6.5e-42 175.3 249 43.0
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 8.4e-42 174.9 232 44.8
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-41 174.5 229 43.7
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.9e-41 173.7 185 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 4.2e-41 172.6 153 55.6
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 4.6e-40 169.1 262 40.5
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 5.1e-39 165.6 203 46.3
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.1e-39 165.6 149 53.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 5.1e-39 165.6 189 48.7
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 8.7e-39 164.9 192 50.5
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 4.3e-38 162.5 200 47.0
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 4.3e-38 162.5 189 46.6
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 4.3e-38 162.5 201 47.8
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.8e-36 157.1 250 37.6
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.0e-35 153.7 115 60.9
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.6e-32 144.1 165 50.9
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.6e-32 142.5 202 42.6
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.3e-31 140.2 172 44.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.0e-31 139.8 201 42.8
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 8.8e-31 138.3 199 47.7
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.4e-28 131.0 134 50.7
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.4e-28 131.0 126 52.4
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.8e-28 130.6 99 57.6
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.4e-28 130.2 80 67.5
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 5.3e-28 129.0 201 38.8
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.5e-27 125.9 162 53.7
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.0e-22 110.5 172 37.8
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.8e-21 105.9 60 73.3
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.2e-17 92.8 165 40.0
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 5.5e-17 92.4 164 42.1
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.7e-16 89.4 98 42.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.0e-15 88.2 64 56.2
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.3e-15 87.0 68 64.7
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-14 84.3 90 51.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 9.7e-14 81.6 164 45.1
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 4.8e-13 79.3 161 36.6
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-11 74.7 91 47.3
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.2e-11 74.7 47 66.0
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 2.0e-11 73.9 164 38.4
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.6e-11 73.6 102 48.0
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 2.6e-11 73.6 91 47.3
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.6e-11 73.6 163 37.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 4.5e-11 72.8 58 60.3
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 7.7e-11 72.0 105 45.7
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.5e-10 68.9 96 40.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 8.5e-10 68.6 112 43.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.2e-08 64.7 149 34.9
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.6e-08 64.3 68 50.0
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.6e-08 63.2 50 52.0
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 4.7e-08 62.8 52 50.0
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 8.0e-08 62.0 69 53.6
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.0e-07 61.6 133 32.3
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.0e-07 59.7 51 49.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 8.8e-07 58.5 71 36.6
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 8.8e-07 58.5 56 53.6
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 2.0e-06 57.4 74 39.2


User provided reference genes

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