Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 0.0e+00 1112.8 570 100.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 0.0e+00 1103.2 570 99.1
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 7.8e-311 1069.7 570 96.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 7.8e-311 1069.7 570 96.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.7e-310 1068.5 571 96.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.7e-310 1068.5 571 96.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.7e-310 1068.5 571 96.1
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.7e-305 1052.0 570 94.9
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 6.4e-305 1050.0 570 94.7
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.2e-303 1045.8 566 94.3
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 7.8e-303 1043.1 599 90.8
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 6.2e-300 1033.5 566 92.9
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.3e-299 1031.6 570 93.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.2e-298 1029.2 566 92.8
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-296 1022.7 570 92.5
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 9.5e-293 1009.6 574 91.8
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.4e-272 942.6 548 88.5
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 8.1e-268 926.8 566 84.5
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.9e-261 905.6 554 83.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.3e-260 902.9 551 82.9
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.1e-260 902.1 551 82.8
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.9e-259 897.1 551 83.3
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 9.0e-259 896.7 564 81.7
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.6e-258 895.2 557 83.1
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.4e-258 894.8 476 95.6
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 3.4e-258 894.8 558 82.3
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.3e-257 892.9 547 83.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.7e-257 892.5 525 85.3
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.9e-257 891.7 505 87.7
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 3.2e-256 888.3 540 83.0
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.6e-255 885.9 522 85.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.7e-255 885.2 530 84.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.7e-255 885.2 558 81.5
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 4.6e-255 884.4 541 83.2
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.8e-254 882.5 558 80.1
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.3e-254 882.1 526 83.8
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 6.7e-254 880.6 530 83.6
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 8.7e-254 880.2 566 79.3
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.1e-253 879.8 533 83.1
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.9e-253 879.0 561 79.5
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.5e-253 878.6 569 79.1
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 4.3e-253 877.9 501 86.6
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.3e-253 877.9 566 79.9
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-252 875.9 573 78.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 3.7e-252 874.8 548 81.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.2e-252 874.0 563 78.9
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.2e-252 874.0 560 78.9
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.1e-251 873.2 568 79.2
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.1e-251 873.2 532 83.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-251 872.8 534 83.3
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.4e-251 872.8 542 81.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.4e-251 872.1 548 81.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 6.9e-251 870.5 563 78.9
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 9.0e-251 870.2 563 78.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.2e-250 869.8 538 82.3
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.0e-250 869.0 573 77.7
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.0e-250 869.0 543 80.7
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.0e-250 869.0 539 82.0
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.8e-250 867.5 538 81.8
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 5.8e-250 867.5 519 83.6
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 7.6e-250 867.1 563 78.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.0e-249 866.7 556 79.1
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.0e-249 866.7 518 84.4
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.3e-249 866.3 564 78.2
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.7e-249 865.9 538 81.4
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.9e-249 865.1 524 83.2
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 3.8e-249 864.8 542 80.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.0e-249 864.4 549 80.0
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.1e-248 863.2 544 81.2
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.9e-248 862.4 572 77.4
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.5e-248 862.1 540 81.1
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 4.2e-248 861.3 561 78.3
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 5.5e-248 860.9 555 78.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 9.3e-248 860.1 559 79.4
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-247 859.8 532 82.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.6e-247 859.4 560 78.8
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 3.5e-247 858.2 590 75.8
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.1e-247 857.4 548 79.0
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.9e-247 857.1 550 79.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.3e-246 856.3 536 80.8
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.8e-246 855.9 530 81.9
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-246 855.1 532 82.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-246 855.1 536 80.2
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.1e-246 854.4 538 80.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 5.7e-245 850.9 572 76.7
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.7e-245 850.1 547 79.0
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.2e-244 849.0 542 79.5
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.1e-243 845.1 546 79.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.9e-243 844.0 526 78.9
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.6e-242 842.0 549 78.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.9e-242 840.9 570 76.8
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 7.7e-242 840.5 560 76.6
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.2e-240 835.1 554 76.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.7e-238 827.4 554 75.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.3e-237 824.7 549 76.5
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.7e-237 824.3 550 76.2
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 9.7e-237 823.5 568 73.9
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.3e-233 813.1 561 75.6
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.5e-232 808.9 557 74.9
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.6e-231 806.2 468 85.7
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.6e-229 798.9 567 72.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.3e-220 767.7 482 79.9
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.4e-219 766.5 562 73.7
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.4e-219 766.5 503 73.6
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.3e-217 760.0 548 69.5
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.2e-216 754.2 501 72.1
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.1e-215 752.7 517 74.5
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 4.4e-213 745.0 549 67.4
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 6.5e-209 731.1 405 90.6
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.9e-208 729.6 486 76.1
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.1e-203 712.2 442 80.1
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.8e-199 699.1 435 79.5
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.6e-197 692.6 533 65.9
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.4e-195 686.0 524 68.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.3e-192 675.2 531 67.6
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.4e-190 670.2 497 65.6
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.1e-187 658.7 562 65.3
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.0e-185 652.5 565 63.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.9e-185 652.1 458 71.2
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 6.6e-185 651.4 512 62.1
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 7.3e-184 647.9 514 64.2
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.4e-173 612.1 542 63.3
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.1e-166 590.9 318 90.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.8e-159 566.2 512 58.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-158 563.9 532 58.3
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-157 560.8 492 61.4
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.6e-157 559.7 342 84.5
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.4e-156 554.7 454 61.5
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-155 554.3 495 58.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-155 554.3 494 58.9
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-155 553.9 495 58.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.0e-137 493.0 331 72.8
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.2e-131 472.6 492 52.2
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.7e-124 450.7 536 46.5
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 8.5e-108 395.2 597 43.6
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.3e-105 387.1 547 40.4
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-97 361.3 437 48.7
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 8.8e-89 332.0 440 41.8
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-87 327.8 365 53.2
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.6e-69 266.5 171 82.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.2e-66 258.5 185 67.6
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.3e-65 254.2 565 36.1
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.0e-60 238.8 256 51.2
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-54 218.4 411 38.2
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 4.4e-48 196.8 141 71.6
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.2e-46 190.3 510 32.0
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-41 174.9 105 79.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 3.4e-40 170.6 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.0e-36 157.5 115 76.5
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 5.1e-36 156.8 80 97.5
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.7e-28 129.4 102 74.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.3e-27 127.5 91 78.0
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.8e-26 124.4 137 51.1
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 9.3e-22 109.4 71 77.5
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 6.7e-20 103.2 71 78.9
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.1e-19 102.4 85 63.5
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 5.3e-17 93.6 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.1e-14 85.9 50 82.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.9e-14 85.1 53 81.1
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.2e-13 82.4 55 78.2
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.0e-12 79.3 98 52.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.8e-12 76.3 69 59.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 5.7e-11 73.6 43 83.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 7.4e-11 73.2 94 41.5
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.1e-09 67.4 76 50.0
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.7e-08 63.2 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-07 62.4 44 65.9
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.1e-06 59.3 50 58.0


User provided reference genes

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