Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 3.8e-70 268.1 137 100.0
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 4.8e-65 251.1 137 96.4
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 5.8e-63 244.2 125 100.0
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 2.5e-61 238.8 125 96.0
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 4.2e-61 238.0 125 95.2
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 4.2e-61 238.0 125 95.2
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 5.5e-61 237.7 125 96.8
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 5.5e-61 237.7 125 95.2
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 5.5e-61 237.7 125 95.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 7.1e-61 237.3 125 96.0
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 7.1e-61 237.3 125 96.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 7.1e-61 237.3 125 96.0
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 7.1e-61 237.3 125 96.0
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 7.1e-61 237.3 125 96.0
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 7.1e-61 237.3 125 96.0
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 9.3e-61 236.9 125 94.4
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 2.7e-60 235.3 125 95.2
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 2.7e-60 235.3 125 95.2
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 1.3e-59 233.0 125 93.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 1.3e-59 233.0 125 93.6
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 1.3e-57 226.5 125 88.8
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 2.6e-55 218.8 125 86.4
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 3.4e-55 218.4 125 84.8
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 3.4e-55 218.4 125 85.6
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.4e-55 218.4 125 85.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.4e-55 218.4 125 85.6
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 4.5e-55 218.0 125 84.8
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 4.5e-55 218.0 125 84.8
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 7.6e-55 217.2 125 83.2
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 7.6e-55 217.2 125 84.8
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.0e-54 216.9 125 84.8
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 1.7e-54 216.1 125 84.8
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 3.8e-54 214.9 125 84.0
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 6.5e-54 214.2 125 83.2
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 6.5e-54 214.2 125 82.4
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 6.5e-54 214.2 125 82.4
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 6.5e-54 214.2 125 81.6
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 6.5e-54 214.2 125 83.2
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 80.8
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 80.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 82.4
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 82.4
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 83.2
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 83.2
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 8.4e-54 213.8 125 83.2
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 1.1e-53 213.4 125 83.2
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 1.4e-53 213.0 125 81.6
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 1.9e-53 212.6 125 81.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 1.9e-53 212.6 125 81.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 2.5e-53 212.2 125 80.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.5e-53 212.2 125 82.4
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 2.5e-53 212.2 125 80.8
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 2.5e-53 212.2 125 82.4
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 2.5e-53 212.2 125 81.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 4.2e-53 211.5 125 80.0
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 4.2e-53 211.5 125 83.2
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 5.5e-53 211.1 125 80.0
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 7.1e-53 210.7 125 80.8
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 7.1e-53 210.7 125 80.8
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 80.0
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 80.0
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 81.6
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 80.0
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 80.8
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 81.6
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 9.3e-53 210.3 125 80.0
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.2e-52 209.9 123 82.1
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.6e-52 209.5 125 80.8
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 1.6e-52 209.5 125 80.8
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 1.6e-52 209.5 125 80.8
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.6e-52 209.5 124 80.6
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.1e-52 209.1 125 80.8
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.1e-52 209.1 125 79.2
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.1e-52 209.1 125 80.0
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 2.1e-52 209.1 125 80.0
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.1e-52 209.1 125 81.6
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 2.1e-52 209.1 125 81.6
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 2.7e-52 208.8 123 79.7
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 2.7e-52 208.8 125 79.2
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 2.7e-52 208.8 125 80.8
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 3.5e-52 208.4 124 79.0
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 3.5e-52 208.4 125 80.0
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 4.6e-52 208.0 125 81.6
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 4.6e-52 208.0 124 79.0
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 6.0e-52 207.6 125 80.8
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.0e-52 207.6 125 80.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 6.0e-52 207.6 125 78.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 6.0e-52 207.6 125 80.0
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 6.0e-52 207.6 124 79.8
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 6.0e-52 207.6 125 80.0
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 7.9e-52 207.2 124 80.6
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.0e-51 206.8 125 79.2
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.3e-51 206.5 125 79.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 1.3e-51 206.5 124 78.2
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.8e-51 206.1 123 80.5
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 2.3e-51 205.7 125 78.4
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 2.3e-51 205.7 125 77.6
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 3.0e-51 205.3 125 76.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 3.9e-51 204.9 125 77.6
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 5.1e-51 204.5 125 86.4
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 5.1e-51 204.5 125 86.4
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 8.7e-51 203.8 125 77.6
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.1e-50 203.4 125 76.8
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 1.5e-50 203.0 125 76.8
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 1.9e-50 202.6 125 76.0
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 3.3e-50 201.8 125 76.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 4.3e-50 201.4 125 76.8
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 4.3e-50 201.4 125 76.0
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 4.3e-50 201.4 125 76.0
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 5.7e-50 201.1 125 75.2
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 7.4e-50 200.7 125 76.8
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 7.4e-50 200.7 125 74.4
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 7.4e-50 200.7 125 76.0
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.7e-50 200.3 125 76.0
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 9.7e-50 200.3 125 76.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 9.7e-50 200.3 125 75.2
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-49 199.9 125 77.6
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 1.3e-49 199.9 125 78.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.6e-49 199.5 125 76.0
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.6e-49 199.5 125 76.0
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 2.8e-49 198.7 128 71.1
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 4.8e-49 198.0 125 77.6
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.2e-49 197.2 125 76.8
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 6.9e-48 194.1 125 74.4
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 6.9e-48 194.1 125 73.6
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 6.9e-48 194.1 125 74.4
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 1.2e-47 193.4 111 84.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 1.2e-47 193.4 111 84.7
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.5e-47 193.0 125 73.6
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.5e-47 193.0 125 72.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 7.7e-47 190.7 125 70.4
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 1.1e-45 186.8 125 76.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.2e-44 183.3 138 68.1
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 7.9e-44 180.6 125 68.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.3e-43 179.1 124 71.8
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 3.7e-41 171.8 125 64.0
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 6.1e-36 154.5 125 59.2
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 6.7e-35 151.0 110 69.1
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 4.1e-32 141.7 84 79.8
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.2e-31 140.2 85 80.0
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.9e-30 135.6 128 51.6
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 8.2e-25 117.5 130 48.5
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.1e-24 117.1 128 46.1
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 3.4e-18 95.5 57 77.2
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 7.7e-15 84.3 44 95.5
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 7.7e-15 84.3 44 95.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.2e-14 82.8 131 33.6
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 6.8e-11 71.2 38 84.2


User provided reference genes

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