Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 7.6e-81 303.9 168 100.0
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-79 299.7 168 98.8
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 4.2e-79 298.1 168 98.2
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-77 293.5 171 96.5
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.4e-71 273.1 171 90.1
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 9.0e-58 227.3 171 79.5
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.9e-56 222.2 172 72.7
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-54 215.7 174 76.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-54 215.7 168 73.8
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 6.1e-54 214.5 168 73.2
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 6.1e-54 214.5 168 73.2
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 8.2e-51 204.1 177 73.4
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.4e-50 203.4 176 73.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.3e-48 196.8 176 74.4
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.4e-47 193.4 173 74.0
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 3.9e-45 185.3 174 72.4
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-44 183.3 173 71.7
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.5e-44 183.3 173 71.7
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 4.8e-43 178.3 172 66.9
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 6.3e-43 177.9 179 69.8
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 3.5e-41 172.2 159 67.9
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 8.0e-38 161.0 159 68.6
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.0e-33 146.4 184 54.9
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 6.5e-32 141.4 169 53.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.8e-27 125.9 168 50.0
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.1e-26 120.9 180 47.2
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.6e-25 120.2 152 50.0
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.5e-25 118.6 169 47.9
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 4.5e-25 118.6 169 47.9
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.0e-24 117.5 166 46.4
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 2.9e-24 115.9 169 49.1
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 2.9e-24 115.9 169 49.1
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 6.5e-24 114.8 181 47.5
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.9e-23 113.2 184 47.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.6e-22 110.2 165 46.7
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-22 109.4 158 45.6
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 8.0e-22 107.8 184 44.6
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.2e-20 104.0 176 44.3
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-20 103.6 167 43.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-20 103.2 167 44.9
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 2.0e-20 103.2 167 44.9
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 4.9e-19 98.6 155 44.5
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-18 96.7 172 43.6
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-17 92.8 98 63.3
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 6.6e-16 88.2 173 38.7
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.5e-15 86.3 178 36.0
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 3.3e-15 85.9 179 36.3
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-15 85.9 169 37.9
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 4.3e-15 85.5 204 35.8
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 5.6e-15 85.1 192 38.0
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.6e-15 85.1 152 37.5
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 9.5e-15 84.3 201 35.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 9.5e-15 84.3 198 37.9
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-14 84.0 205 36.6
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-14 84.0 183 35.0
BraA03t09836Z Brassica rapa HOM05D002580 ORTHO05D002811 1.6e-14 83.6 59 83.1
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-14 82.8 183 36.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-14 82.8 145 37.9
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.8e-14 82.8 184 37.0
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.8e-14 82.8 191 35.1
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.7e-14 82.0 113 48.7
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-14 82.0 158 35.4
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 4.7e-14 82.0 143 38.5
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 6.1e-14 81.6 116 45.7
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 6.1e-14 81.6 184 37.0
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.0e-14 81.3 158 35.4
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.0e-14 81.3 182 33.5
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-13 80.9 117 46.2
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.0e-13 80.9 117 46.2
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.0e-13 80.9 204 32.4
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.0e-13 80.9 176 35.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-13 80.9 181 33.1
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.0e-13 80.9 191 34.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.0e-13 80.9 97 46.4
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.0e-13 80.9 194 37.1
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.4e-13 80.5 167 37.7
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-13 80.1 185 34.1
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.3e-13 79.7 117 47.0
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 2.3e-13 79.7 202 34.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-13 79.0 185 33.5
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 5.2e-13 78.6 195 33.3
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.8e-13 78.2 114 46.5
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 6.8e-13 78.2 198 35.4
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.8e-13 78.2 198 35.4
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.8e-13 78.2 198 35.4
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.8e-13 78.2 198 35.4
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 6.8e-13 78.2 184 35.3
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 8.9e-13 77.8 103 47.6
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 8.9e-13 77.8 173 35.3
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-12 77.4 113 45.1
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.5e-12 77.0 183 35.0
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 2.6e-12 76.3 141 40.4
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 2.6e-12 76.3 141 40.4
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.6e-12 76.3 175 33.7
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.6e-12 76.3 198 34.8
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 3.4e-12 75.9 172 35.5
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.4e-12 75.5 120 40.0
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 5.7e-12 75.1 81 53.1
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 7.5e-12 74.7 103 45.6
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.5e-12 74.7 165 36.4
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 9.8e-12 74.3 204 32.4
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.9e-11 72.8 166 34.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.9e-11 72.8 103 44.7
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-11 72.8 113 42.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.7e-11 72.4 167 32.3
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 4.9e-11 72.0 167 31.1
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.4e-10 70.5 176 35.2
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.4e-10 70.5 152 37.5
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.8e-10 70.1 95 47.4
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 3.2e-10 69.3 151 34.4
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 3.2e-10 69.3 171 36.8
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 4.1e-10 68.9 87 43.7
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 5.4e-10 68.6 155 34.8
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 9.2e-10 67.8 175 36.0
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 9.2e-10 67.8 172 34.3
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.2e-09 67.4 105 37.1
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.6e-09 67.0 105 37.1
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.6e-09 67.0 79 43.0
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.0e-09 66.6 154 32.5
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-09 66.6 131 35.1
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-09 66.6 131 35.1
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 2.7e-09 66.2 75 49.3
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 2.7e-09 66.2 162 35.8
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 2.7e-09 66.2 102 42.2
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 3.5e-09 65.9 89 46.1
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.6e-09 65.5 154 33.1
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 4.6e-09 65.5 90 43.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 5.9e-09 65.1 81 50.6
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 7.8e-09 64.7 70 48.6
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.0e-08 64.3 209 30.1
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-08 63.9 54 63.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.3e-08 63.9 119 33.6
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.0e-08 62.8 104 40.4
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.0e-08 62.8 104 40.4
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 3.9e-08 62.4 83 45.8
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 5.0e-08 62.0 141 33.3
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.0e-08 62.0 63 49.2
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.0e-08 62.0 63 49.2
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 5.0e-08 62.0 88 39.8
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 6.6e-08 61.6 118 37.3
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 6.6e-08 61.6 109 36.7
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 8.6e-08 61.2 64 45.3
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 8.6e-08 61.2 130 33.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.1e-07 60.8 69 46.4
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.5e-07 60.5 93 41.9
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.9e-07 60.1 136 32.4
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 3.3e-07 59.3 167 31.1
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 3.3e-07 59.3 66 43.9
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.3e-07 59.3 88 37.5
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 7.3e-07 58.2 164 32.3
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 9.5e-07 57.8 80 41.2
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 6.2e-06 55.1 92 41.3
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 6.2e-06 55.1 132 34.1
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 6.2e-06 55.1 70 45.7
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 6.2e-06 55.1 165 30.9
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 8.0e-06 54.7 135 31.1
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 8.0e-06 54.7 122 33.6


User provided reference genes

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