Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 8.5e-157 557.0 286 100.0
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 8.5e-157 557.0 286 100.0
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 7.2e-148 527.3 286 95.5
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 8.0e-147 523.9 287 95.5
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.0e-93 347.4 310 66.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.9e-85 318.9 315 62.9
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.8e-82 310.1 352 56.2
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.2e-81 307.4 326 57.7
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.0e-81 306.6 326 58.3
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 4.9e-80 302.0 326 59.5
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-75 286.6 153 99.3
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.0e-69 266.2 342 49.7
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.1e-61 238.8 348 45.7
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 5.7e-60 235.3 328 48.8
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 6.3e-59 231.9 323 47.7
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 6.3e-59 231.9 346 45.4
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 6.9e-58 228.4 328 48.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 5.9e-57 225.3 325 47.7
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 5.9e-57 225.3 325 47.7
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 5.9e-57 225.3 325 47.7
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.9e-56 223.0 342 46.2
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 8.5e-56 221.5 328 47.3
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.4e-55 220.7 344 43.9
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.7e-54 216.5 321 47.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 7.9e-54 214.9 337 46.0
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 9.0e-50 201.4 317 45.7
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-49 201.1 317 45.7
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.0e-48 198.0 309 46.6
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.3e-48 197.6 317 46.1
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.5e-47 193.4 321 46.4
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.6e-46 189.1 315 45.1
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 5.3e-42 175.6 147 59.2
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 1.5e-41 174.1 296 41.2
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 3.4e-41 172.9 289 41.5
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.4e-41 172.9 300 40.0
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.4e-41 172.9 300 40.0
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 7.7e-41 171.8 149 58.4
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.0e-40 171.4 147 61.2
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.3e-40 171.0 154 55.2
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.8e-40 169.5 302 38.4
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.1e-39 167.9 340 38.2
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.5e-39 166.8 298 38.6
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 9.4e-39 164.9 146 56.8
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.2e-38 164.5 313 38.7
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.7e-38 163.3 298 38.6
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 3.6e-38 162.9 170 51.8
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 6.1e-38 162.2 342 38.3
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.9e-38 161.8 344 36.3
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.0e-36 157.1 144 55.6
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.4e-36 156.0 175 49.7
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 9.7e-36 154.8 253 40.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.7e-35 154.1 269 40.9
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.7e-35 154.1 333 37.5
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.8e-35 153.3 259 44.0
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.4e-34 151.0 147 50.3
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 7.0e-34 148.7 189 47.6
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.6e-33 146.7 155 50.3
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.5e-33 146.4 172 47.7
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 3.5e-33 146.4 150 50.0
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 5.9e-33 145.6 290 41.4
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 5.9e-33 145.6 113 62.8
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 7.7e-33 145.2 136 54.4
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.0e-32 144.8 212 43.4
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.0e-32 144.8 212 43.4
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.0e-32 144.8 155 49.0
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 6.5e-32 142.1 153 50.3
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 6.5e-32 142.1 142 54.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.1e-31 141.4 141 53.2
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.9e-31 140.6 275 36.0
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.9e-31 140.6 279 39.8
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 7.2e-31 138.7 142 52.8
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 9.4e-31 138.3 261 36.8
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 9.4e-31 138.3 279 38.4
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 2.1e-30 137.1 235 41.3
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.7e-30 136.7 251 38.6
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.7e-30 136.0 273 37.7
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.7e-30 136.0 163 46.0
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.7e-30 136.0 249 37.3
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 6.1e-30 135.6 151 48.3
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.4e-29 134.4 319 32.9
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.4e-29 134.4 270 36.7
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.8e-29 134.0 185 42.7
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.8e-29 134.0 287 36.9
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-29 133.7 350 32.0
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 4.0e-29 132.9 278 37.8
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.2e-29 132.5 258 34.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 6.7e-29 132.1 226 40.7
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 6.7e-29 132.1 206 41.3
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 8.8e-29 131.7 319 32.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.2e-28 131.3 350 31.4
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.2e-28 131.3 350 31.4
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.2e-28 131.3 244 37.7
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 2.0e-28 130.6 285 36.1
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 4.4e-28 129.4 279 34.8
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.2e-27 127.1 299 36.8
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.8e-26 124.0 287 32.4
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 4.1e-26 122.9 155 43.9
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 4.1e-26 122.9 198 38.4
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 5.3e-26 122.5 291 37.1
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 9.1e-26 121.7 131 52.7
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.2e-25 121.3 114 51.8
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.6e-25 120.9 273 36.3
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.6e-25 120.9 299 33.8
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 4.5e-25 119.4 258 35.3
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 5.9e-25 119.0 173 44.5
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 5.9e-25 119.0 291 32.6
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 5.9e-25 119.0 198 37.9
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.7e-24 117.5 120 52.5
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.9e-24 116.7 138 47.1
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 6.5e-24 115.5 170 39.4
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.5e-23 114.4 129 43.4
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 3.6e-22 109.8 173 43.9
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 8.0e-22 108.6 94 58.5
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.0e-21 108.2 161 39.1
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.4e-21 107.8 167 40.7
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.8e-21 107.5 248 32.7
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 4.0e-21 106.3 161 40.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 5.2e-21 105.9 215 36.7
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.2e-21 105.9 210 37.6
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 5.2e-21 105.9 177 38.4
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.0e-20 104.0 187 39.6
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 2.6e-20 103.6 288 33.3
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.6e-20 103.6 280 31.8
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 2.6e-20 103.6 161 42.2
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 9.8e-20 101.7 92 62.0
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 4.8e-19 99.4 102 52.0
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 6.3e-19 99.0 102 52.0
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.4e-18 97.8 195 34.9
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.0e-17 94.0 218 33.9
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 8.5e-16 88.6 142 41.5
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.5e-15 87.8 137 38.0
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 8.0e-14 82.0 91 48.4
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.4e-13 81.3 90 45.6
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 5.2e-13 79.3 67 71.6
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 8.8e-13 78.6 284 29.2
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 2.8e-11 73.6 122 41.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.3e-08 64.7 178 30.3
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.8e-08 63.2 77 39.0
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 8.6e-08 62.0 126 32.5
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 8.6e-08 62.0 113 36.3
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.2e-06 58.2 94 38.3
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 3.6e-06 56.6 112 30.4
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 6.1e-06 55.8 113 32.7
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 8.0e-06 55.5 152 27.6


User provided reference genes

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