Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 5.0e-282 973.8 487 100.0
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 2.5e-278 961.4 484 99.2
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 5.7e-278 960.3 487 98.2
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.4e-278 959.9 487 98.2
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 4.8e-277 957.2 487 97.7
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 8.2e-277 956.4 487 97.7
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 1.1e-276 956.1 487 97.7
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.8e-276 955.3 487 97.5
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.8e-276 955.3 487 97.5
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 3.1e-276 954.5 486 97.7
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 6.9e-276 953.4 487 97.5
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-275 952.6 488 96.7
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-275 952.6 486 97.5
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 4.5e-275 950.7 487 96.3
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.2e-274 948.3 489 97.3
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 6.5e-274 946.8 487 97.3
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.1e-273 946.0 485 97.9
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.0e-270 935.3 487 94.7
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.0e-266 922.9 485 92.8
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.9e-266 921.4 486 93.8
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 5.5e-265 917.1 487 91.0
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 5.5e-265 917.1 487 93.2
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 92.8
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 91.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.6e-264 915.6 487 91.0
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.8e-263 912.1 487 90.1
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.8e-263 912.1 484 91.7
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.3e-263 911.8 487 91.6
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 3.0e-263 911.4 487 90.6
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 3.0e-263 911.4 487 91.0
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.9e-263 911.0 487 90.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 91.7
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 5.1e-263 910.6 487 90.3
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 5.1e-263 910.6 487 90.6
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.1e-263 910.6 485 91.5
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 6.7e-263 910.2 487 90.6
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 6.7e-263 910.2 486 92.0
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 90.8
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 89.1
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 8.8e-263 909.8 485 92.0
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 91.8
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.1e-262 909.4 484 90.9
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.5e-262 909.1 485 91.3
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.5e-262 909.1 485 91.5
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 90.7
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.5e-262 909.1 487 92.0
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.5e-262 909.1 484 91.3
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 2.0e-262 908.7 486 91.8
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.0e-262 908.7 487 89.7
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 2.0e-262 908.7 486 91.4
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.4e-262 907.5 487 90.3
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 4.4e-262 907.5 486 91.2
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 4.4e-262 907.5 486 91.2
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 7.4e-262 906.7 484 90.9
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 9.7e-262 906.4 486 91.6
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.3e-261 906.0 484 90.9
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 1.7e-261 905.6 486 91.2
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.7e-261 905.6 484 90.9
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 2.2e-261 905.2 487 90.3
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 3.7e-261 904.4 484 91.5
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 4.8e-261 904.0 487 91.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 91.4
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 91.8
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 90.1
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 8.2e-261 903.3 484 91.1
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.4e-260 902.5 480 91.2
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.1e-260 901.0 487 91.6
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 4.1e-260 901.0 486 91.8
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 4.1e-260 901.0 493 91.5
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 5.3e-260 900.6 486 91.4
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 7.0e-260 900.2 487 89.7
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 7.0e-260 900.2 492 90.2
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 9.1e-260 899.8 487 89.9
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 9.1e-260 899.8 486 91.8
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.2e-259 899.4 487 89.7
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.2e-259 899.4 487 89.5
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.2e-259 899.4 482 91.1
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.2e-259 899.4 483 90.5
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-259 899.4 486 91.2
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.6e-259 899.0 479 91.2
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.5e-259 897.9 486 90.9
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.5e-259 897.5 487 89.9
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 5.9e-259 897.1 486 89.7
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 7.7e-259 896.7 486 91.2
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.0e-258 896.3 484 90.3
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 2.2e-258 895.2 490 90.4
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.2e-258 895.2 484 90.1
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.2e-258 895.2 487 90.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.9e-258 894.8 487 88.3
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.8e-258 894.4 460 95.7
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 5.0e-258 894.0 487 90.3
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 6.5e-258 893.6 477 91.8
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.1e-257 892.9 486 89.7
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.1e-257 892.9 487 90.3
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.5e-257 892.5 487 89.3
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.5e-257 892.5 487 88.5
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.5e-257 891.7 485 89.9
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 7.2e-257 890.2 480 91.2
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 7.2e-257 890.2 460 95.2
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 9.4e-257 889.8 460 95.4
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.6e-256 889.0 483 89.9
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.6e-256 889.0 485 89.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.7e-256 888.3 483 90.1
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 1.5e-254 882.5 482 89.4
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.3e-254 881.3 478 89.1
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 2.8e-253 878.2 437 94.1
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 4.5e-251 870.9 460 93.9
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 8.5e-250 866.7 460 92.6
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 6.1e-248 860.5 487 87.9
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 4.0e-247 857.8 436 92.4
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-246 856.3 483 87.4
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.7e-245 852.4 436 91.7
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.4e-244 848.6 439 91.3
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.6e-243 845.9 480 83.3
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 4.7e-240 834.3 407 96.6
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 6.1e-240 833.9 434 89.4
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.2e-238 829.7 431 88.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.7e-237 825.9 408 95.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.2e-235 819.7 407 94.8
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.7e-235 818.5 406 94.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.0e-234 816.6 405 94.3
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 4.0e-231 804.7 433 87.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.7e-221 772.7 486 79.4
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 2.2e-221 772.3 427 84.1
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 2.9e-221 771.9 384 94.5
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.4e-220 768.8 436 82.8
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 3.5e-219 765.0 421 82.9
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 9.9e-206 720.3 353 95.2
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 2.9e-205 718.8 481 77.5
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.0e-202 708.8 393 88.0
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 4.0e-191 671.8 369 90.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.2e-189 666.0 346 91.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 6.6e-186 654.4 395 75.9
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.0e-182 642.9 486 71.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.3e-177 625.5 315 93.7
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.9e-173 612.5 487 69.0
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-173 612.1 486 68.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.6e-171 605.1 486 68.7
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 8.5e-165 584.3 331 88.5
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-146 523.9 279 88.5
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.7e-139 499.6 351 71.8
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.2e-126 457.6 275 76.4
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.8e-114 417.2 203 96.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 8.1e-99 365.2 180 92.8
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.2e-95 353.2 191 85.9
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.1e-95 352.1 172 97.7
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 8.1e-91 338.6 171 93.0
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.4e-81 306.2 485 41.9
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 2.8e-75 287.0 146 91.8
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 6.7e-69 265.8 146 87.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.3e-66 256.1 164 81.7
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 4.5e-65 253.1 127 96.1
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 4.2e-63 246.5 127 87.4
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.1e-58 230.3 147 85.7
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.8e-53 214.5 259 43.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-52 211.1 100 97.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-49 201.4 102 93.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 6.3e-43 179.5 127 74.8
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 2.6e-36 157.5 77 100.0
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 2.6e-36 157.5 77 100.0
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.7e-36 156.4 102 77.5
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.4e-33 147.1 108 68.5
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 2.7e-30 137.5 69 100.0
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.9e-29 133.7 71 91.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 2.0e-28 131.3 197 37.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-27 128.3 68 89.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.0e-26 122.9 66 89.4
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-25 121.7 66 87.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.6e-22 110.5 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 8.0e-22 109.4 67 71.6
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.8e-19 100.9 67 68.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.7e-16 91.7 168 36.3
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 4.0e-13 80.5 71 56.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 8.8e-13 79.3 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.0e-12 78.2 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.6e-09 68.6 61 57.4


User provided reference genes

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