Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 2.4e-23 111.3 55 100.0
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 9.0e-23 109.4 55 98.2
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 9.0e-23 109.4 55 98.2
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 2.6e-22 107.8 55 96.4
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 2.6e-22 107.8 55 96.4
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 3.4e-22 107.5 55 94.5
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 5.5e-20 100.1 55 87.3
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 5.5e-20 100.1 55 87.3
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 5.5e-20 100.1 55 87.3
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 7.1e-20 99.8 55 85.5
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 7.1e-20 99.8 53 86.8
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 1.6e-19 98.6 55 85.5
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 2.1e-19 98.2 55 85.5
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 1.0e-18 95.9 55 83.6
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 3.0e-18 94.4 55 80.0
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 5.1e-18 93.6 55 80.0
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 5.1e-18 93.6 52 80.8
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 8.7e-18 92.8 55 78.2
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 1.5e-17 92.0 52 80.8
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 3.3e-17 90.9 55 74.5
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 2.8e-16 87.8 55 69.1
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 4.8e-16 87.0 55 72.7
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 69.1
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 1.4e-15 85.5 55 69.1
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 1.4e-15 85.5 55 69.1
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 69.1
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 67.3
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 9.0e-15 82.8 52 75.0
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 67.3
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 67.3
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 67.3
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 67.3
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 63.6
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 61.8
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 65.5
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 63.6
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 63.6
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 5.0e-13 77.0 55 61.8
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 5.0e-13 77.0 55 61.8
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 5.0e-13 77.0 55 60.0
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 5.0e-13 77.0 55 60.0
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 1.1e-12 75.9 55 65.5
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 2.5e-12 74.7 55 60.0
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 4.2e-12 73.9 54 63.0
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 4.2e-12 73.9 53 58.5
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 5.5e-12 73.6 55 61.8
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 1.6e-11 72.0 55 56.4
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 2.1e-11 71.6 55 58.2
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 4.6e-11 70.5 55 58.2
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 7.9e-11 69.7 55 52.7
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 7.9e-11 69.7 47 61.7
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 1.3e-10 68.9 55 54.5
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 2.3e-10 68.2 55 58.2
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 3.0e-10 67.8 55 52.7
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 3.9e-10 67.4 55 56.4
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 5.1e-10 67.0 55 56.4
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 5.1e-10 67.0 55 56.4
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 6.7e-10 66.6 52 55.8
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 6.7e-10 66.6 52 55.8
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 6.7e-10 66.6 55 54.5
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 6.7e-10 66.6 55 52.7
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 1.1e-09 65.9 55 56.4
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 2.5e-09 64.7 49 57.1
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 3.3e-09 64.3 55 56.4
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 5.7e-09 63.5 55 52.7
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 5.7e-09 63.5 55 52.7
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 5.7e-09 63.5 55 50.9
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 7.4e-09 63.2 55 54.5
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 7.4e-09 63.2 52 51.9
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 9.7e-09 62.8 55 50.9
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 1.3e-08 62.4 55 56.4
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 2.2e-08 61.6 48 60.4
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 2.2e-08 61.6 49 57.1
Mapoly0138s0028 Marchantia polymorpha HOM05D007944 ORTHO05D010014 2.4e-07 58.2 55 50.9
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 3.1e-07 57.8 38 65.8
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 4.5e-06 53.9 55 47.3
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 5.9e-06 53.5 51 41.2


User provided reference genes

Program Settings