Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p03820 Brassica napus HOM05D000805 ORTHO05D012592 1.8e-67 259.2 142 100.0
BolC3t12917H Brassica oleracea HOM05D000805 ORTHO05D012592 1.0e-38 163.7 142 72.5
A03p03380 Brassica napus HOM05D000805 ORTHO05D012592 1.4e-35 153.3 90 95.6
BraA03t09689Z Brassica rapa HOM05D000805 ORTHO05D012592 1.4e-35 153.3 90 95.6
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 4.7e-23 111.7 84 77.4
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 1.0e-22 110.5 90 71.1
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 1.0e-22 110.5 90 71.1
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 1.0e-22 110.5 90 71.1
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 2.3e-22 109.4 90 71.1
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 4.0e-22 108.6 91 73.6
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 8.8e-22 107.5 90 71.1
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 4.4e-21 105.1 90 68.9
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 4.4e-21 105.1 90 68.9
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 9.8e-21 104.0 85 72.9
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.7e-20 103.2 86 70.9
A03p03370 Brassica napus HOM05D000805 ORTHO05D012592 3.1e-19 99.0 65 89.2
AT5G07571 Arabidopsis thaliana HOM05D000805 ORTHO05D012592 4.2e-16 88.6 88 63.6
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 1.2e-15 87.0 76 69.7
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 3.6e-15 85.5 70 74.3
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 1.0e-14 84.0 80 63.8
Carub.0006s0654 Capsella rubella HOM05D000805 ORTHO05D012592 5.2e-14 81.6 69 72.5
CARHR205590 Cardamine hirsuta HOM05D007846 ORTHO05D012592 3.5e-10 68.9 69 62.3
Carub.0006s0655 Capsella rubella HOM05D000805 ORTHO05D114467 1.3e-09 67.0 62 67.7
Migut.F00529 Erythranthe guttata HOM05D000805 ORTHO05D000624 1.1e-08 63.9 96 45.8
PGR142G3461 Punica granatum HOM05D000805 ORTHO05D000624 1.1e-08 63.9 90 45.6
Cfa013591 Carpinus fangiana HOM05D000805 ORTHO05D000624 1.5e-08 63.5 89 46.1
Haze_22208 Corylus avellana HOM05D000805 ORTHO05D000624 3.3e-08 62.4 89 44.9
CSS0030466 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 7.3e-08 61.2 92 40.2
Eucgr.K00124 Eucalyptus grandis HOM05D000805 ORTHO05D000624 9.5e-08 60.8 83 45.8
AL8G25490 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 1.2e-07 60.5 88 42.0
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 1.2e-07 60.5 69 53.6
Cpa.g.sc13.249 Carica papaya HOM05D000805 ORTHO05D000624 1.2e-07 60.5 89 41.6
Lsat_1_v5_gn_2_127000 Lactuca sativa HOM05D000805 ORTHO05D000624 1.6e-07 60.1 91 41.8
Aa31LG3G7740 Aethionema arabicum HOM05D000805 ORTHO05D000624 2.1e-07 59.7 87 41.4
Dinv06599 Davidia involucrata HOM05D000805 ORTHO05D000624 2.1e-07 59.7 94 41.5
TAR629G3395 Trochodendron aralioides HOM05D000225 ORTHO05D002520 2.1e-07 59.7 77 49.4
Atru.chr1.921 Acer truncatum HOM05D000805 ORTHO05D000624 2.8e-07 59.3 94 41.5
AT5G51210 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 2.8e-07 59.3 88 39.8
CiPaw.07G184600 Carya illinoinensis HOM05D000805 ORTHO05D000624 2.8e-07 59.3 95 40.0
Cc02_g04750 Coffea canephora HOM05D000805 ORTHO05D000624 2.8e-07 59.3 87 43.7
THA.LOC104802395 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 2.8e-07 59.3 74 50.0
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 3.6e-07 58.9 70 48.6
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 3.6e-07 58.9 70 48.6
AT2G25890 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 6.1e-07 58.2 94 39.4
ECA233G2751 Erigeron canadensis HOM05D000805 ORTHO05D000624 6.1e-07 58.2 69 52.2
Thhalv10015754m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 6.1e-07 58.2 82 45.1
Gohir.A06G090900 Gossypium hirsutum HOM05D000805 ORTHO05D000624 6.1e-07 58.2 78 50.0
HanXRQChr08g0223251 Helianthus annuus HOM05D000805 ORTHO05D000624 6.1e-07 58.2 89 42.7
Lj1P975T23 Lonicera japonica HOM05D000805 ORTHO05D000624 6.1e-07 58.2 86 41.9
TAR629G3054 Trochodendron aralioides HOM05D000805 ORTHO05D000624 6.1e-07 58.2 90 42.2
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 8.0e-07 57.8 67 52.2
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 8.0e-07 57.8 61 59.0
Lj5g0000097 Lotus japonicus HOM05D000805 ORTHO05D000624 8.0e-07 57.8 78 44.9
Nitab4.5_0010435g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 8.0e-07 57.8 83 45.8
THA.LOC104825056 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 8.0e-07 57.8 83 43.4
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 1.0e-06 57.4 70 48.6
CSS0014477 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 1.0e-06 57.4 91 41.8
CSS0044328 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 1.0e-06 57.4 91 41.8
CANSAT56G2548 Cannabis sativa HOM05D000805 ORTHO05D000624 1.0e-06 57.4 88 40.9
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 1.0e-06 57.4 70 51.4
Dinv16870 Davidia involucrata HOM05D000124 ORTHO05D000056 1.0e-06 57.4 75 48.0
HanXRQChr05g0138621 Helianthus annuus HOM05D000805 ORTHO05D000624 1.0e-06 57.4 83 43.4
Nitab4.5_0000600g0090 Nicotiana tabacum HOM05D000805 ORTHO05D000624 1.0e-06 57.4 91 41.8
Oeu021666.1 Olea europaea HOM05D000805 ORTHO05D000624 1.0e-06 57.4 75 48.0
PSO017G5620 Papaver somniferum HOM05D000805 ORTHO05D000624 1.0e-06 57.4 79 49.4
PSO478G1041 Papaver somniferum HOM05D000805 ORTHO05D000624 1.0e-06 57.4 79 49.4
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.4e-06 57.0 71 53.5
Cfa007378 Carpinus fangiana HOM05D000805 ORTHO05D000624 1.4e-06 57.0 85 47.1
COL.COLO4_37336 Corchorus olitorius HOM05D000805 ORTHO05D000624 1.4e-06 57.0 69 52.2
Os04g0546500 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 1.4e-06 57.0 90 38.9
Prupe.1G443700 Prunus persica HOM05D000805 ORTHO05D000624 1.4e-06 57.0 85 41.2
SGA_v2.0_scaffold56G19908 Striga asiatica HOM05D000805 ORTHO05D000624 1.4e-06 57.0 90 44.4
Zm00001eb074940 Zea mays HOM05D000805 ORTHO05D000624 1.4e-06 57.0 80 45.0
Actinidia13613 Actinidia chinensis HOM05D000805 ORTHO05D000624 1.8e-06 56.6 88 43.2
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 1.8e-06 56.6 67 49.3
CiPaw.08G042000 Carya illinoinensis HOM05D000805 ORTHO05D000624 1.8e-06 56.6 88 42.0
Ciclev10006168m.g Citrus clementina HOM05D000805 ORTHO05D000624 1.8e-06 56.6 91 41.8
Duzib205G2062 Durio zibethinus HOM05D000805 ORTHO05D000624 1.8e-06 56.6 92 37.0
Sp6g13410 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.8e-06 56.6 78 44.9
Aa31LG5G9790 Aethionema arabicum HOM05D000805 ORTHO05D000624 2.3e-06 56.2 85 41.2
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 2.3e-06 56.2 71 52.1
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 2.3e-06 56.2 67 50.7
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 2.3e-06 56.2 67 50.7
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 2.3e-06 56.2 67 50.7
Carub.0008s1125 Capsella rubella HOM05D000805 ORTHO05D000624 2.3e-06 56.2 79 45.6
Ciclev10009815m.g Citrus clementina HOM05D000805 ORTHO05D000624 2.3e-06 56.2 85 44.7
MBI04_g06987_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 2.3e-06 56.2 86 44.2
Zm00001eb000200 Zea mays HOM05D000805 ORTHO05D000624 2.3e-06 56.2 68 44.1
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 3.0e-06 55.8 74 47.3
ClCG07G017010 Citrullus lanatus HOM05D000805 ORTHO05D000624 3.0e-06 55.8 85 44.7
MELO3C017642.2 Cucumis melo HOM05D000805 ORTHO05D000624 3.0e-06 55.8 85 44.7
CsaV3_4G004230 Cucumis sativus L. HOM05D000805 ORTHO05D000624 3.0e-06 55.8 85 44.7
DCAR_020171 Daucus carota HOM05D000805 ORTHO05D000624 3.0e-06 55.8 65 50.8
Gohir.D06G089800 Gossypium hirsutum HOM05D000805 ORTHO05D000624 3.0e-06 55.8 78 48.7
Atru.chr6.2284 Acer truncatum HOM05D000805 ORTHO05D000624 4.0e-06 55.5 59 57.6
A03p32480 Brassica napus HOM05D000001 ORTHO05D000003 4.0e-06 55.5 74 51.4
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 4.0e-06 55.5 69 50.7
BraA03t12417Z Brassica rapa HOM05D000001 ORTHO05D000003 4.0e-06 55.5 74 51.4
CSS0044260 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 4.0e-06 55.5 94 40.4
CiPaw.07G201600 Carya illinoinensis HOM05D000805 ORTHO05D000624 4.0e-06 55.5 78 47.4
FAN01G1750 Fragaria x ananassa HOM05D000805 ORTHO05D000624 4.0e-06 55.5 75 45.3
Glyma.16G071800 Glycine max HOM05D000805 ORTHO05D000624 4.0e-06 55.5 77 49.4
SGA_v2.0_scaffold44G16579 Striga asiatica HOM05D000805 ORTHO05D000624 4.0e-06 55.5 83 43.4
HPP92_014687 Vanilla planifolia HOM05D000805 ORTHO05D000624 4.0e-06 55.5 75 44.0
BcaB07g30150 Brassica carinata HOM05D000805 ORTHO05D000624 5.2e-06 55.1 78 48.7
BcaC01g04525 Brassica carinata HOM05D000805 ORTHO05D000624 5.2e-06 55.1 74 50.0
Thhalv10021571m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 5.2e-06 55.1 80 46.2
FAN08G1080 Fragaria x ananassa HOM05D000805 ORTHO05D000624 5.2e-06 55.1 65 50.8
Gorai.010G103700 Gossypium raimondii HOM05D000805 ORTHO05D000624 5.2e-06 55.1 85 41.2
Sp3g00480 Schrenkiella parvula HOM05D000805 ORTHO05D000624 5.2e-06 55.1 98 41.8
TAR374G0719 Trochodendron aralioides HOM05D000805 ORTHO05D000624 5.2e-06 55.1 100 41.0
vmacro09924 Vaccinium macrocarpon HOM05D000805 ORTHO05D000624 5.2e-06 55.1 93 40.9
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 6.8e-06 54.7 70 44.3
A02p35580 Brassica napus HOM05D000805 ORTHO05D000624 6.8e-06 54.7 78 47.4
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 6.8e-06 54.7 70 44.3
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 6.8e-06 54.7 70 44.3
BraA02t08560Z Brassica rapa HOM05D000805 ORTHO05D000624 6.8e-06 54.7 78 47.4
ClCG01G004720 Citrullus lanatus HOM05D000805 ORTHO05D000624 6.8e-06 54.7 85 40.0
COL.COLO4_21008 Corchorus olitorius HOM05D000805 ORTHO05D000624 6.8e-06 54.7 85 42.4
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 6.8e-06 54.7 69 50.7
FvH4_7g26900 Fragaria vesca HOM05D000805 ORTHO05D000624 6.8e-06 54.7 75 45.3
FAN03G1505 Fragaria x ananassa HOM05D000805 ORTHO05D000624 6.8e-06 54.7 75 45.3
FAN06G5020 Fragaria x ananassa HOM05D000805 ORTHO05D000624 6.8e-06 54.7 75 45.3
PSO063G5652 Papaver somniferum HOM05D000805 ORTHO05D000624 6.8e-06 54.7 78 43.6
PSO832G3184 Papaver somniferum HOM05D000805 ORTHO05D000624 6.8e-06 54.7 78 43.6
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 6.8e-06 54.7 61 57.4
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 6.8e-06 54.7 76 47.4
Sc16g0003220 Simmondsia chinensis HOM05D000805 ORTHO05D000624 6.8e-06 54.7 59 55.9
THA.LOC104811538 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 6.8e-06 54.7 83 41.0
TAR626G0937 Trochodendron aralioides HOM05D000805 ORTHO05D000624 6.8e-06 54.7 78 47.4
TAR626G1162 Trochodendron aralioides HOM05D000805 ORTHO05D000624 6.8e-06 54.7 78 47.4
Actinidia31770 Actinidia chinensis HOM05D000805 ORTHO05D000624 8.9e-06 54.3 92 41.3
Aa31LG2G5010 Aethionema arabicum HOM05D000805 ORTHO05D000624 8.9e-06 54.3 74 52.7
ATR0705G219 Amborella trichopoda HOM05D000805 ORTHO05D000624 8.9e-06 54.3 92 38.0
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 8.9e-06 54.3 69 49.3
BcaB06g29636 Brassica carinata HOM05D000805 ORTHO05D000624 8.9e-06 54.3 94 37.2
BolC2t11502H Brassica oleracea HOM05D000805 ORTHO05D000624 8.9e-06 54.3 78 48.7
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 8.9e-06 54.3 69 49.3
BolC4t27103H Brassica oleracea HOM05D000805 ORTHO05D000624 8.9e-06 54.3 94 37.2
DCAR_003073 Daucus carota HOM05D000805 ORTHO05D000624 8.9e-06 54.3 87 43.7
DCAR_016034 Daucus carota HOM05D000805 ORTHO05D000624 8.9e-06 54.3 59 52.5
FvH4_5g05960 Fragaria vesca HOM05D000805 ORTHO05D000624 8.9e-06 54.3 59 54.2
FAN04G0721 Fragaria x ananassa HOM05D000805 ORTHO05D000624 8.9e-06 54.3 65 50.8
Lsat_1_v5_gn_4_77001 Lactuca sativa HOM05D000805 ORTHO05D000624 8.9e-06 54.3 99 40.4
Lsat_1_v5_gn_8_9800 Lactuca sativa HOM05D000805 ORTHO05D000624 8.9e-06 54.3 90 40.0
RcHm_v2.0_Chr1g0373571 Rosa chinensis HOM05D000805 ORTHO05D000624 8.9e-06 54.3 75 45.3


User provided reference genes

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