Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p02700 Brassica napus HOM05D015071 ORTHO05D017323 4.0e-68 261.2 120 100.0
BcaB01g05956 Brassica carinata HOM05D015071 ORTHO05D017323 2.7e-64 248.4 120 95.8
A03p02350 Brassica napus HOM05D015071 ORTHO05D017323 1.6e-48 196.1 92 96.7
BolC3t12824H Brassica oleracea HOM05D015071 ORTHO05D017323 9.4e-41 170.2 76 100.0
CARHR207740 Cardamine hirsuta HOM05D015071 ORTHO05D017323 4.4e-30 134.8 96 70.8
AL6G15420 Arabidopsis lyrata HOM05D015071 ORTHO05D017323 5.7e-30 134.4 92 69.6
AT5G05530 Arabidopsis thaliana HOM05D015071 ORTHO05D017323 2.2e-29 132.5 92 68.5
Carub.0006s0443 Capsella rubella HOM05D015071 ORTHO05D017323 1.1e-09 67.0 42 64.3
BcaB03g16317 Brassica carinata HOM05D008374 ORTHO05D010264 5.5e-09 64.7 79 40.5
BcaC06g36080 Brassica carinata HOM05D008374 ORTHO05D010264 1.6e-08 63.2 49 53.1
C07p08070 Brassica napus HOM05D008374 ORTHO05D010264 1.6e-08 63.2 49 53.1
BolC7t41225H Brassica oleracea HOM05D008374 ORTHO05D010264 1.6e-08 63.2 49 53.1
A07p05080 Brassica napus HOM05D008374 ORTHO05D010264 2.1e-08 62.8 49 53.1
BraA07t28300Z Brassica rapa HOM05D008374 ORTHO05D010264 2.1e-08 62.8 49 53.1
BcaC02g09597 Brassica carinata HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
BcaC02g09599 Brassica carinata HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
A04p10810 Brassica napus HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
C04p44530 Brassica napus HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
C04p44560 Brassica napus HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
BolC4t26025H Brassica oleracea HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
BolC4t26028H Brassica oleracea HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
BraA04t16748Z Brassica rapa HOM05D008374 ORTHO05D010264 4.7e-08 61.6 44 54.5
BcaC02g09601 Brassica carinata HOM05D008374 ORTHO05D010264 6.1e-08 61.2 48 50.0
BolC4t26027H Brassica oleracea HOM05D008374 ORTHO05D010264 6.1e-08 61.2 48 50.0
Sp6g06800 Schrenkiella parvula HOM05D008374 ORTHO05D010264 6.1e-08 61.2 86 34.9
AL6G47060 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 8.0e-08 60.8 57 42.1
A04p10820 Brassica napus HOM05D008374 ORTHO05D010264 8.0e-08 60.8 48 50.0
BraA04t16749Z Brassica rapa HOM05D008374 ORTHO05D010264 8.0e-08 60.8 48 50.0
Carub.0005s2936 Capsella rubella HOM05D000086 ORTHO05D000311 1.4e-07 60.1 63 41.3
BcaB06g27118 Brassica carinata HOM05D008374 ORTHO05D010264 1.8e-07 59.7 55 45.5
AT5G37200 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 2.3e-07 59.3 55 43.6
THA.LOC104802179 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 2.3e-07 59.3 62 38.7
AL5G45440 Arabidopsis lyrata HOM05D000086 ORTHO05D000311 3.0e-07 58.9 61 41.0
AT3G62690 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 3.0e-07 58.9 61 41.0
CARHR254040 Cardamine hirsuta HOM05D008302 ORTHO05D000038 3.0e-07 58.9 60 43.3
AT4G05350 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 5.2e-07 58.2 99 33.3
Sp7g04410 Schrenkiella parvula HOM05D008374 ORTHO05D010264 5.2e-07 58.2 49 46.9
BcaC08g45234 Brassica carinata HOM05D000086 ORTHO05D000311 6.8e-07 57.8 56 42.9
CARHR172960 Cardamine hirsuta HOM05D000086 ORTHO05D000311 6.8e-07 57.8 61 41.0
AT5G37230 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 8.9e-07 57.4 78 38.5
MSTRG.11416 Avicennia marina HOM05D000086 ORTHO05D000983 8.9e-07 57.4 59 44.1
BcaC02g09598 Brassica carinata HOM05D008374 ORTHO05D010264 8.9e-07 57.4 49 49.0
BcaC02g09600 Brassica carinata HOM05D008374 ORTHO05D010264 8.9e-07 57.4 49 49.0
BolC4t26030H Brassica oleracea HOM05D008374 ORTHO05D010264 8.9e-07 57.4 49 49.0
CARHR254030 Cardamine hirsuta HOM05D008302 ORTHO05D000038 8.9e-07 57.4 57 43.9
CsaV3_1G039540 Cucumis sativus L. HOM05D000001 ORTHO05D000003 8.9e-07 57.4 55 38.2
Sp7g04420 Schrenkiella parvula HOM05D008374 ORTHO05D010264 8.9e-07 57.4 49 46.9
Solyc12g019144.1 Solanum lycopersicum HOM05D000187 ORTHO05D000230 8.9e-07 57.4 56 44.6
Aa31LG1G28890 Aethionema arabicum HOM05D000086 ORTHO05D000311 1.2e-06 57.0 61 42.6
AL6G47070 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 1.2e-06 57.0 57 42.1
AT5G37270 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 1.5e-06 56.6 55 45.5
A07p26060 Brassica napus HOM05D000086 ORTHO05D000311 1.5e-06 56.6 56 42.9
C06p28370 Brassica napus HOM05D000086 ORTHO05D000311 1.5e-06 56.6 56 42.9
BolC6t38007H Brassica oleracea HOM05D000086 ORTHO05D000311 1.5e-06 56.6 56 42.9
Carub.0006s3134 Capsella rubella HOM05D008302 ORTHO05D000038 1.5e-06 56.6 100 35.0
Thhalv10006175m.g Eutrema salsugineum HOM05D000086 ORTHO05D000311 1.5e-06 56.6 56 42.9
Aa31LG1G10040 Aethionema arabicum HOM05D008302 ORTHO05D000038 2.0e-06 56.2 56 39.3
AT5G37250 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 2.0e-06 56.2 55 45.5
EL10Ac9g21562 Beta vulgaris HOM05D010671 ORTHO05D013417 2.0e-06 56.2 82 39.0
Thhalv10028317m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 2.0e-06 56.2 49 46.9
Solyc09g010650.1 Solanum lycopersicum HOM05D000086 ORTHO05D009581 2.0e-06 56.2 67 40.3
Atru.chr4.2378 Acer truncatum HOM05D000082 ORTHO05D003202 2.6e-06 55.8 105 30.5
Aa31LG3G8360 Aethionema arabicum HOM05D012539 ORTHO05D000038 2.6e-06 55.8 85 31.8
AL4G18590 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 2.6e-06 55.8 60 36.7
CARHR255750 Cardamine hirsuta HOM05D008302 ORTHO05D000038 2.6e-06 55.8 58 44.8
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 2.6e-06 55.8 72 34.7
Sp6g10420 Schrenkiella parvula HOM05D008374 ORTHO05D010264 2.6e-06 55.8 82 32.9
BcaB02g07326 Brassica carinata HOM05D000086 ORTHO05D000311 3.4e-06 55.5 51 45.1
BcaC07g40748 Brassica carinata HOM05D000086 ORTHO05D000311 3.4e-06 55.5 56 41.1
BcaC08g45216 Brassica carinata HOM05D000086 ORTHO05D000311 3.4e-06 55.5 51 45.1
BcaC08g45217 Brassica carinata HOM05D000086 ORTHO05D000311 3.4e-06 55.5 51 45.1
A09p54560 Brassica napus HOM05D000086 ORTHO05D000311 3.4e-06 55.5 56 41.1
C08p37460 Brassica napus HOM05D000086 ORTHO05D000311 3.4e-06 55.5 56 41.1
BolC8t51325H Brassica oleracea HOM05D000086 ORTHO05D000311 3.4e-06 55.5 56 41.1
BraA07t30254Z Brassica rapa HOM05D000086 ORTHO05D000311 3.4e-06 55.5 51 45.1
BraA09t40868Z Brassica rapa HOM05D000086 ORTHO05D000311 3.4e-06 55.5 56 41.1
Aa31sc13G120 Aethionema arabicum HOM05D008302 ORTHO05D000038 4.4e-06 55.1 48 47.9
AL4G17000 Arabidopsis lyrata HOM05D008317 ORTHO05D012776 4.4e-06 55.1 56 44.6
Thhalv10028290m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 4.4e-06 55.1 55 43.6
Sp3g29000 Schrenkiella parvula HOM05D008374 ORTHO05D010264 4.4e-06 55.1 50 50.0
Sp5g00830 Schrenkiella parvula HOM05D000086 ORTHO05D000311 4.4e-06 55.1 56 42.9
EL10Ac2g04176 Beta vulgaris HOM05D016861 ORTHO05D018265 5.7e-06 54.7 44 47.7
BcaC02g06983 Brassica carinata HOM05D000086 ORTHO05D000311 5.7e-06 54.7 58 37.9
BolC4t28771H Brassica oleracea HOM05D000086 ORTHO05D000311 5.7e-06 54.7 58 37.9
Manes.04G143400 Manihot esculenta HOM05D000086 ORTHO05D000431 5.7e-06 54.7 52 44.2
Manes.12G022800 Manihot esculenta HOM05D000086 ORTHO05D001065 5.7e-06 54.7 50 44.0
Mapoly0045s0150 Marchantia polymorpha HOM05D000157 ORTHO05D000557 5.7e-06 54.7 78 35.9
Aa31LG10G16490 Aethionema arabicum HOM05D000157 ORTHO05D000311 7.5e-06 54.3 51 43.1
AT4G12190 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 7.5e-06 54.3 63 41.3
AT5G37280 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 7.5e-06 54.3 51 47.1
BcaC07g40770 Brassica carinata HOM05D000086 ORTHO05D000311 7.5e-06 54.3 51 43.1
A04p35000 Brassica napus HOM05D000086 ORTHO05D000311 7.5e-06 54.3 58 37.9
BraSC79t46690Z Brassica rapa HOM05D000086 ORTHO05D000311 7.5e-06 54.3 58 37.9
THA.LOC104824660 Tarenaya hassleriana HOM05D049172 ORTHO05D000038 7.5e-06 54.3 76 35.5
Aa31LG1G19800 Aethionema arabicum HOM05D012539 ORTHO05D000038 9.8e-06 53.9 50 44.0
AT4G12140 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 9.8e-06 53.9 57 38.6
EL10Ac2g04179 Beta vulgaris HOM05D016861 ORTHO05D018265 9.8e-06 53.9 53 43.4
Gohir.A13G235250 Gossypium hirsutum HOM05D000440 ORTHO05D000295 9.8e-06 53.9 60 38.3


User provided reference genes

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