Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 0.0e+00 1452.6 697 100.0
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1397.5 682 98.1
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1397.5 682 98.1
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 0.0e+00 1367.4 682 95.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 0.0e+00 1355.9 682 95.3
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1315.8 682 91.9
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1238.0 704 85.1
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1204.5 677 84.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1194.5 686 82.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1189.1 673 83.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1177.2 681 81.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1176.4 689 81.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.6e-296 1020.4 672 72.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.6e-289 997.7 667 71.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.7e-288 995.7 702 69.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.1e-286 988.8 695 69.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.1e-285 984.9 697 68.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.0e-285 984.6 668 70.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.8e-285 983.8 664 70.6
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.4e-282 974.2 665 70.5
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-276 955.7 695 67.8
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.4e-276 954.9 715 66.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.6e-271 937.6 698 65.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-254 883.2 667 65.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 4.1e-245 851.7 666 63.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.5e-228 795.4 707 54.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.9e-228 794.7 694 54.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.9e-226 789.6 708 54.5
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.2e-226 788.9 705 54.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.0e-224 782.3 705 54.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 6.7e-224 781.2 684 54.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.1e-223 780.4 693 54.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.0e-223 779.6 682 54.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-223 779.2 676 56.5
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.8e-222 775.8 669 54.4
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.3e-222 774.6 682 55.0
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.8e-221 773.1 670 55.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.4e-221 772.7 680 55.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 5.3e-221 771.5 693 54.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.1e-221 770.8 709 54.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.2e-220 770.4 683 53.9
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-220 770.0 673 55.4
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.7e-220 769.2 680 54.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.5e-220 768.8 689 53.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-219 765.8 673 55.1
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.8e-219 765.4 676 55.0
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.1e-218 763.8 691 52.7
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.5e-218 763.5 646 55.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 5.5e-218 761.5 700 54.1
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.4e-218 760.8 703 54.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.6e-217 760.0 662 55.3
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 2.7e-217 759.2 686 53.4
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.7e-217 759.2 677 53.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 4.7e-217 758.4 700 51.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 8.0e-217 757.7 711 52.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 8.0e-217 757.7 682 54.1
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.0e-216 757.3 697 51.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.8e-216 756.5 691 52.8
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.8e-216 756.5 683 53.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.3e-216 756.1 677 53.5
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 3.0e-216 755.7 699 53.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 5.2e-216 755.0 660 54.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.8e-216 754.6 699 53.4
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 8.8e-216 754.2 678 54.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.7e-215 751.5 669 55.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 7.5e-215 751.1 686 52.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.7e-214 750.0 686 52.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.8e-214 748.4 657 55.3
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.3e-214 747.7 683 53.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.1e-213 747.3 746 50.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.4e-213 746.9 703 52.6
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 7.0e-213 744.6 683 53.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 7.0e-213 744.6 721 51.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.2e-212 743.8 676 53.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.6e-212 743.4 691 51.1
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.5e-212 741.9 680 52.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.9e-212 741.5 671 54.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.9e-212 741.5 678 53.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.0e-211 740.7 749 50.9
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.3e-211 740.3 718 51.0
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.3e-211 740.3 680 52.5
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.2e-211 739.6 705 50.6
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.5e-210 736.1 691 52.2
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.2e-210 735.7 664 52.9
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.2e-210 735.3 694 51.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 4.0e-208 728.8 683 52.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 6.8e-208 728.0 672 52.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.0e-207 726.5 669 53.1
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.7e-206 723.4 718 50.7
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.7e-206 723.4 683 51.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.7e-206 723.4 667 53.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.3e-206 721.5 671 52.6
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.1e-205 719.2 681 51.8
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.1e-205 719.2 701 49.4
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 3.1e-205 719.2 669 52.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.1e-202 710.7 672 51.6
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 4.3e-202 708.8 677 52.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.3e-202 708.8 679 51.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-201 707.2 683 51.0
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.0e-201 704.5 687 50.5
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.2e-200 701.8 688 49.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.0e-199 699.9 848 45.0
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.3e-198 694.5 617 54.3
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 9.2e-197 691.0 602 54.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.9e-195 685.6 679 50.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.0e-192 677.6 686 49.4
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.4e-192 677.2 670 51.5
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.4e-192 677.2 616 52.8
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.0e-191 673.3 688 49.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-191 672.2 683 49.6
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.8e-191 671.8 680 49.6
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.7e-190 670.2 685 49.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.9e-190 669.5 735 45.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 6.6e-187 658.3 664 48.9
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.6e-186 655.2 706 47.7
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.1e-184 649.4 605 52.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.4e-183 645.6 670 50.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 7.5e-183 644.8 588 52.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.4e-181 639.8 717 46.0
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 3.2e-181 639.4 678 48.7
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-177 625.9 751 44.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.8e-176 623.6 677 47.7
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.2e-173 612.8 671 48.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.9e-166 589.7 687 45.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.9e-166 589.7 678 45.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.8e-164 581.6 677 44.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 7.4e-154 548.5 533 50.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 9.6e-154 548.1 684 43.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.3e-153 547.7 665 45.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.7e-153 546.2 450 61.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.4e-151 539.7 529 50.1
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-148 531.2 326 75.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.1e-141 508.1 561 46.2
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.3e-139 501.1 426 54.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.8e-136 490.7 546 45.6
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 8.5e-126 455.3 395 57.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.5e-109 399.4 289 62.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 8.0e-100 369.0 374 46.5
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.4e-98 363.6 231 73.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.5e-93 347.4 557 36.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 8.9e-91 339.0 313 49.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.0e-90 337.8 551 35.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 9.5e-85 318.9 372 48.7
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-82 312.0 407 39.8
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.4e-82 310.5 585 34.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.8e-76 290.8 390 39.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.1e-69 268.9 239 59.4
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.3e-67 261.2 188 70.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 8.6e-62 242.7 242 55.0
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.1e-56 225.7 156 67.3
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-52 211.8 233 49.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.6e-52 210.7 139 66.9
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 5.8e-50 203.4 326 35.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.4e-48 198.0 219 47.9
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-42 179.1 99 81.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-42 179.1 99 81.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-42 179.1 99 81.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-42 179.1 117 66.7
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 9.3e-40 169.5 120 60.8
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.1e-35 154.5 242 37.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.1e-23 115.2 211 31.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 8.7e-22 109.8 135 40.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 3.7e-20 104.4 183 29.0
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.9e-17 94.7 59 69.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-15 89.0 71 57.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.3e-14 85.1 46 84.8
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.0e-14 84.7 265 27.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-12 78.6 48 72.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-12 78.6 48 72.9
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 5.3e-11 73.9 221 29.0
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 5.1e-06 57.4 44 65.9


User provided reference genes

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