Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p02470 Brassica napus HOM05D012504 ORTHO05D012796 5.9e-95 350.9 183 100.0
BolC3t12798H Brassica oleracea HOM05D012504 ORTHO05D012796 5.7e-82 307.8 158 100.0
A03p02160 Brassica napus HOM05D012504 ORTHO05D012796 8.6e-54 214.2 134 85.1
BraA03t09580Z Brassica rapa HOM05D012504 ORTHO05D012796 1.1e-53 213.8 134 85.1
Sp6g37720 Schrenkiella parvula HOM05D012504 ORTHO05D012796 8.7e-46 187.6 210 55.2
Thhalv10015305m.g Eutrema salsugineum HOM05D012504 ORTHO05D012796 3.4e-34 149.1 190 50.5
BcaC06g32221 Brassica carinata HOM05D012504 ORTHO05D012796 3.2e-32 142.5 192 52.6
AL6G14950 Arabidopsis lyrata HOM05D012504 ORTHO05D012796 5.6e-29 131.7 207 42.5
AT5G05120 Arabidopsis thaliana HOM05D012504 ORTHO05D012796 6.2e-28 128.3 165 42.4
Carub.0006s0405 Capsella rubella HOM05D012504 ORTHO05D012796 2.2e-25 119.8 180 40.6
C09p71580 Brassica napus HOM05D012504 ORTHO05D012796 4.6e-23 112.1 143 51.0
CARHR208150 Cardamine hirsuta HOM05D012504 ORTHO05D012796 1.3e-22 110.5 187 41.7
BraA10t45179Z Brassica rapa HOM05D012504 ORTHO05D012796 3.9e-22 109.0 151 49.7
BolC9t59920H Brassica oleracea HOM05D012504 ORTHO05D012796 8.7e-22 107.8 143 50.3
Atru.chr6.2625 Acer truncatum HOM05D000333 ORTHO05D000190 2.7e-07 59.7 91 37.4
BcaC03g17923 Brassica carinata HOM05D000333 ORTHO05D000190 4.6e-07 58.9 63 46.0
A02p39920 Brassica napus HOM05D000333 ORTHO05D000190 4.6e-07 58.9 63 46.0
C02p59820 Brassica napus HOM05D000333 ORTHO05D000190 4.6e-07 58.9 63 46.0
BolC2t12039H Brassica oleracea HOM05D000333 ORTHO05D000190 4.6e-07 58.9 63 46.0
BraA02t08955Z Brassica rapa HOM05D000333 ORTHO05D000190 4.6e-07 58.9 63 46.0
Prupe.3G143800 Prunus persica HOM05D001250 ORTHO05D000627 1.4e-06 57.4 57 43.9
A06p35910 Brassica napus HOM05D000333 ORTHO05D000190 1.8e-06 57.0 56 44.6
BraA06t26516Z Brassica rapa HOM05D000333 ORTHO05D000190 1.8e-06 57.0 56 44.6
THA.LOC109117277 Tarenaya hassleriana HOM05D000333 ORTHO05D000627 1.8e-06 57.0 57 47.4
Actinidia01691 Actinidia chinensis HOM05D000333 ORTHO05D000190 2.3e-06 56.6 107 31.8
Carub.0006s2298 Capsella rubella HOM05D000333 ORTHO05D000190 2.3e-06 56.6 46 52.2
CsaV3_3G028730 Cucumis sativus L. HOM05D000333 ORTHO05D000190 2.3e-06 56.6 109 29.4
CARHR188330 Cardamine hirsuta HOM05D000333 ORTHO05D000190 3.0e-06 56.2 125 29.6
MELO3C012789.2 Cucumis melo HOM05D000333 ORTHO05D000190 3.9e-06 55.8 179 26.3
SGA_v2.0_scaffold36G14545 Striga asiatica HOM05D001250 ORTHO05D000627 3.9e-06 55.8 97 38.1
Aa31sc291G10 Aethionema arabicum HOM05D003047 ORTHO05D000627 5.1e-06 55.5 52 46.2
Thhalv10004784m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 5.1e-06 55.5 44 52.3
Lj5g0015570 Lotus japonicus HOM05D000333 ORTHO05D000190 5.1e-06 55.5 46 50.0
Solyc05g009180.1 Solanum lycopersicum HOM05D001250 ORTHO05D000627 5.1e-06 55.5 86 36.0
VMungo0647G0683 Vigna mungo HOM05D000333 ORTHO05D000190 5.1e-06 55.5 60 43.3
BcaB07g29937 Brassica carinata HOM05D000333 ORTHO05D000190 6.7e-06 55.1 63 42.9
AUR62030826 Chenopodium quinoa HOM05D000333 ORTHO05D001954 6.7e-06 55.1 44 52.3
Oeu027046.1 Olea europaea HOM05D000333 ORTHO05D000190 6.7e-06 55.1 59 47.5
Oeu027047.1 Olea europaea HOM05D000333 ORTHO05D000190 6.7e-06 55.1 59 47.5
QL02p051021 Quercus lobata HOM05D001250 ORTHO05D000627 6.7e-06 55.1 61 44.3
QL12p016532 Quercus lobata HOM05D001250 ORTHO05D000627 6.7e-06 55.1 61 44.3
VMungo0464G0058 Vigna mungo HOM05D000333 ORTHO05D000190 6.7e-06 55.1 60 46.7
AT5G25160 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 8.8e-06 54.7 44 52.3
Thhalv10015799m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 8.8e-06 54.7 84 39.3
Potri.008G123100 Populus trichocarpa HOM05D001250 ORTHO05D000627 8.8e-06 54.7 111 32.4
unitig_22.g6865 Utricularia gibba HOM05D001250 ORTHO05D000627 8.8e-06 54.7 86 34.9


User provided reference genes

Program Settings