Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 8.1e-46 186.8 100 100.0
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 3.8e-35 151.4 82 100.0
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 1.2e-33 146.4 82 97.6
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 2.7e-33 145.2 82 96.3
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 7.6e-28 127.1 87 81.6
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 9.3e-26 120.2 87 78.2
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 1.5e-23 112.8 87 73.6
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 3.3e-23 111.7 87 74.7
BcaB01g05901 Brassica carinata HOM05D012863 ORTHO05D008409 4.0e-21 104.8 55 100.0
Aa31LG11G5600 Aethionema arabicum HOM05D012863 ORTHO05D008409 8.4e-19 97.1 103 58.3
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 3.5e-17 91.7 85 62.4
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 6.0e-17 90.9 87 64.4
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.0e-16 90.1 85 62.4
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 1.8e-08 62.8 63 55.6
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 8.7e-08 60.5 52 65.4
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.5e-07 59.7 41 73.2
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 5.7e-07 57.8 55 56.4
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 9.6e-07 57.0 55 54.5
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.3e-06 56.6 51 60.8
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.3e-06 56.6 38 71.1
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.6e-06 56.2 77 57.1
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 2.1e-06 55.8 62 51.6
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 2.1e-06 55.8 64 50.0
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 2.1e-06 55.8 56 53.6
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 3.7e-06 55.1 62 51.6
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 3.7e-06 55.1 44 59.1
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 3.7e-06 55.1 41 68.3
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 4.8e-06 54.7 69 47.8
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 8.2e-06 53.9 31 83.9


User provided reference genes

Program Settings