Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 1.3e-34 149.1 68 100.0
BolC3t12740H Brassica oleracea HOM05D008152 ORTHO05D010231 8.5e-31 136.3 62 100.0
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 1.9e-30 135.2 68 94.1
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 1.9e-30 135.2 68 94.1
BcaB01g05882 Brassica carinata HOM05D008152 ORTHO05D010231 3.2e-30 134.4 63 96.8
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 4.4e-27 124.0 68 88.2
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 1.9e-22 108.6 68 79.4
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 5.5e-22 107.1 68 77.9
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 7.2e-22 106.7 68 77.9
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 1.2e-21 105.9 68 77.9
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 5.7e-19 97.1 68 66.2
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 1.7e-18 95.5 68 69.1
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 2.2e-18 95.1 71 69.0
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 2.2e-18 95.1 69 69.6
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 7.7e-16 86.7 56 71.4
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 2.9e-15 84.7 57 73.7
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 9.4e-14 79.7 55 69.1
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 3.0e-12 74.7 65 55.4
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 6.8e-12 73.6 68 54.4
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 8.8e-12 73.2 54 61.1
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 1.2e-11 72.8 54 61.1
Sp6g38660 Schrenkiella parvula HOM05D008152 ORTHO05D010231 2.0e-11 72.0 53 71.7
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 3.4e-11 71.2 54 66.7
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 1.3e-10 69.3 61 57.4
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 1.7e-10 68.9 56 58.9
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 2.2e-10 68.6 52 59.6
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 1.1e-09 66.2 60 48.3
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 1.4e-09 65.9 54 57.4
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 1.4e-09 65.9 54 57.4
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.4e-09 65.9 60 51.7
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 1.8e-09 65.5 54 57.4
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 1.8e-09 65.5 62 51.6
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 2.4e-09 65.1 58 51.7
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 3.1e-09 64.7 55 61.8
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 4.1e-09 64.3 54 53.7
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 5.4e-09 63.9 58 51.7
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 5.4e-09 63.9 64 48.4
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 9.1e-09 63.2 65 47.7
BcaB05g21787 Brassica carinata HOM05D008152 ORTHO05D010231 1.6e-08 62.4 57 63.2
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 2.0e-08 62.0 52 57.7
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 2.7e-08 61.6 52 57.7
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 2.7e-08 61.6 54 51.9
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 2.7e-08 61.6 53 58.5
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 3.5e-08 61.2 54 55.6
C02p01660 Brassica napus HOM05D008152 ORTHO05D010231 4.5e-08 60.8 55 61.8
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 5.9e-08 60.5 53 54.7
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 5.9e-08 60.5 50 52.0
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 1.0e-07 59.7 54 55.6
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 1.7e-07 58.9 61 50.8
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 1.7e-07 58.9 52 53.8
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 1.7e-07 58.9 54 50.0
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 1.7e-07 58.9 54 53.7
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 2.3e-07 58.5 52 57.7
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 2.3e-07 58.5 52 55.8
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 5.0e-07 57.4 50 50.0
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 1.1e-06 56.2 62 51.6
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 1.5e-06 55.8 27 70.4
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.3e-06 54.7 61 49.2
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.3e-06 54.7 61 49.2
BcaC03g12967 Brassica carinata HOM05D003180 ORTHO05D014840 5.5e-06 53.9 57 52.6
SEGI_34450 Sequoiadendron giganteum HOM05D037356 ORTHO05D010231 5.5e-06 53.9 28 67.9
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 9.5e-06 53.1 28 75.0
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 9.5e-06 53.1 45 44.4


User provided reference genes

Program Settings