Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 2.3e-31 138.3 71 100.0
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 2.3e-31 138.3 71 100.0
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 5.8e-22 107.1 67 83.6
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 2.2e-21 105.1 60 95.0
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 2.2e-21 105.1 60 95.0
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.9e-20 102.1 64 84.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 5.4e-20 100.5 64 79.7
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 9.2e-20 99.8 68 73.5
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.2e-19 99.4 64 78.1
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 2.7e-19 98.2 64 78.1
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 2.7e-19 98.2 64 78.1
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 4.6e-19 97.4 64 76.6
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.3e-18 95.9 64 78.1
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 2.3e-18 95.1 64 76.6
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.1e-17 92.8 68 70.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.5e-17 89.7 63 73.0
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 3.7e-13 77.8 67 61.2
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 2.1e-11 72.0 68 51.5
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 2.7e-11 71.6 70 48.6
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 1.0e-10 69.7 66 56.1
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 1.3e-10 69.3 73 53.4
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 2.3e-10 68.6 66 56.1
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 3.9e-10 67.8 66 48.5
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 5.1e-10 67.4 69 50.7
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 8.6e-10 66.6 66 51.5
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 8.6e-10 66.6 66 51.5
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.1e-09 66.2 66 51.5
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.5e-09 65.9 68 51.5
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 1.5e-09 65.9 69 52.2
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.9e-09 65.5 66 47.0
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.9e-09 65.5 67 49.3
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.5e-09 65.1 69 46.4
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.5e-09 65.1 69 46.4
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 3.3e-09 64.7 66 51.5
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 3.3e-09 64.7 66 53.0
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 5.6e-09 63.9 69 44.9
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 5.6e-09 63.9 66 54.5
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 5.6e-09 63.9 66 53.0
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 7.3e-09 63.5 68 47.1
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 9.5e-09 63.2 68 48.5
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 9.5e-09 63.2 69 50.7
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.2e-08 62.8 63 49.2
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.2e-08 62.8 63 49.2
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.2e-08 62.8 68 47.1
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.6e-08 62.4 69 49.3
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.6e-08 62.4 69 49.3
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.6e-08 62.4 69 47.8
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.1e-08 62.0 69 49.3
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.1e-08 62.0 69 50.7
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 2.1e-08 62.0 68 45.6
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 2.1e-08 62.0 68 45.6
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.8e-08 61.6 69 47.8
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 6.2e-08 60.5 64 50.0
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 6.2e-08 60.5 69 40.6
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.1e-08 60.1 69 47.8
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.1e-07 59.7 69 49.3
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.8e-07 58.9 68 50.0
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 5.2e-07 57.4 66 48.5
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 6.8e-07 57.0 59 54.2
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.6e-06 55.1 63 49.2
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 2.6e-06 55.1 64 45.3
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.4e-06 54.7 68 47.1
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 3.4e-06 54.7 64 50.0
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 5.8e-06 53.9 69 40.6
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 7.6e-06 53.5 69 43.5
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 9.9e-06 53.1 62 48.4


User provided reference genes

Program Settings