Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-286 988.8 497 100.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 4.1e-284 980.7 497 99.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 3.5e-283 977.6 497 98.8
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-279 965.7 497 97.2
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-278 962.6 500 96.4
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.2e-278 962.6 500 97.2
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 2.6e-278 961.4 500 97.0
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.2e-277 958.4 501 96.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.2e-277 958.4 501 96.6
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-277 957.6 501 96.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 4.6e-275 950.7 500 95.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 8.1e-272 939.9 504 94.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 4.9e-269 930.6 498 94.0
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 6.4e-269 930.2 508 92.3
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.1e-268 929.5 499 93.4
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 5.4e-268 927.2 502 93.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.2e-267 926.0 500 93.0
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.0e-266 922.9 502 93.2
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.3e-266 921.8 499 93.4
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.1e-265 919.5 471 97.7
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.3e-265 917.9 499 93.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 5.6e-257 890.6 497 89.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-248 862.4 495 88.5
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.1e-244 847.0 507 83.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 4.2e-236 821.2 445 93.3
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.8e-234 815.8 499 82.4
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.1e-223 780.0 503 76.5
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.0e-221 773.5 509 75.8
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 8.5e-221 770.4 505 77.4
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.4e-220 769.6 500 76.8
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 5.5e-220 767.7 509 75.2
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 9.4e-220 766.9 512 75.2
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.6e-219 765.0 504 76.0
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.8e-218 762.7 509 75.0
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.0e-218 761.9 509 74.9
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.1e-215 753.4 508 74.4
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.4e-215 753.1 511 74.4
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.8e-215 752.7 514 73.5
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.8e-215 752.7 503 75.3
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 7.0e-215 750.7 510 73.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 3.5e-214 748.4 508 74.8
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.5e-214 748.0 506 75.3
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.0e-213 746.9 508 74.8
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 5.0e-213 744.6 508 72.4
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.0e-213 744.6 511 73.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-212 743.4 508 72.2
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 9.4e-212 740.3 510 72.9
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 4.7e-211 738.0 509 73.9
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.0e-210 736.9 506 72.9
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.4e-210 736.5 507 72.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.8e-210 736.1 503 73.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 8.8e-210 733.8 509 72.1
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.3e-208 729.9 509 72.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.2e-208 729.2 514 72.0
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.2e-208 729.2 505 71.7
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.4e-207 726.5 509 71.1
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.4e-207 725.7 507 72.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.1e-207 724.9 505 72.3
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.2e-206 723.4 504 71.8
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.7e-206 722.2 512 71.9
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.0e-205 720.3 506 71.7
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.2e-205 719.2 513 70.8
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.9e-205 718.8 510 71.4
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.8e-205 718.4 514 70.4
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 6.5e-205 717.6 512 70.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.9e-204 716.1 509 71.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.2e-204 714.9 508 71.3
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 7.2e-204 714.1 502 71.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 7.2e-204 714.1 548 66.6
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.6e-203 713.0 509 71.3
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.4e-202 709.9 505 70.7
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.8e-202 709.5 476 74.8
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.0e-202 708.4 506 70.2
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.2e-201 706.8 547 66.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.0e-201 706.1 511 69.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 4.4e-201 704.9 547 66.5
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.8e-201 703.7 492 72.4
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 6.3e-200 701.0 498 70.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.4e-199 699.9 513 67.6
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.1e-199 698.7 511 70.6
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 4.1e-199 698.4 474 75.7
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 9.1e-199 697.2 513 68.6
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 4.5e-198 694.9 478 73.0
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 4.5e-198 694.9 512 68.6
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-197 693.3 508 70.5
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.3e-197 693.3 477 73.2
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-197 693.3 499 70.5
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-197 691.8 499 70.3
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 6.5e-197 691.0 510 68.6
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.9e-196 689.5 501 69.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 9.4e-196 687.2 505 67.9
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.6e-195 686.4 513 68.0
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.8e-194 681.0 513 68.0
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 6.8e-194 681.0 601 60.6
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.6e-193 679.1 509 67.4
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 7.0e-191 671.0 505 68.1
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.7e-190 669.1 452 75.9
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 5.9e-190 667.9 506 67.2
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.0e-189 667.2 513 67.6
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.7e-189 666.4 526 64.3
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.5e-188 662.5 511 68.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.6e-188 661.4 511 68.3
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 5.6e-188 661.4 459 72.3
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.1e-187 657.9 495 66.3
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.6e-185 652.5 537 65.5
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.6e-185 652.5 489 67.3
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 5.7e-185 651.4 505 65.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.9e-184 648.3 582 59.3
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.4e-183 646.7 567 61.0
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.8e-183 646.4 504 64.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 4.1e-183 645.2 504 63.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.0e-182 642.9 445 72.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.5e-182 642.1 507 66.5
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 7.8e-182 641.0 504 65.7
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.9e-181 638.6 525 64.2
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.0e-181 638.3 507 66.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.8e-179 632.5 528 63.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 8.9e-178 627.5 509 63.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.5e-177 626.7 504 62.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.3e-176 623.6 514 64.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 8.3e-176 620.9 508 63.2
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.8e-170 603.2 472 65.9
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 2.2e-160 569.7 404 70.3
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 9.2e-159 564.3 399 70.9
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 6.2e-155 551.6 541 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.6e-147 526.9 532 52.3
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.0e-146 521.2 492 58.5
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 9.9e-145 517.7 663 47.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.3e-141 506.5 416 61.8
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.7e-134 483.0 453 59.2
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.6e-129 466.5 437 58.1
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 3.9e-125 452.6 337 68.2
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.3e-117 426.8 270 79.6
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-113 414.5 273 75.1
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.9e-103 380.6 279 69.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.4e-85 321.2 243 67.5
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.7e-83 314.3 253 61.3
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-81 307.0 211 70.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 2.8e-78 297.0 260 57.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-76 291.6 492 40.2
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 3.0e-69 266.9 214 65.0
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.5e-63 248.1 554 32.9
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.0e-57 227.6 388 36.6
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 3.2e-42 177.2 138 63.8
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.6e-41 173.3 173 54.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.9e-39 167.9 106 78.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.9e-36 155.6 184 43.5
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.6e-32 142.9 121 65.3
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.8e-30 137.5 245 39.6
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.1e-30 136.0 245 39.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.6e-28 131.0 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 8.4e-27 125.9 114 54.4
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.3e-23 113.6 80 73.8
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.2e-17 95.5 183 29.0
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 2.4e-13 81.3 114 44.7
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.0e-13 80.5 72 61.1
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 4.9e-11 73.6 61 63.9
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-08 65.1 105 42.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.9e-08 63.9 208 26.0
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.1e-08 63.5 80 47.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.7e-08 62.8 36 80.6
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.1e-07 62.4 75 38.7
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 7.4e-07 59.7 127 27.6


User provided reference genes

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