Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 9.1e-68 260.0 122 100.0
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 9.8e-62 240.0 130 90.8
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 3.2e-28 128.6 64 100.0
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 4.2e-28 128.3 122 59.0
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 6.6e-26 120.9 122 56.6
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 6.6e-26 120.9 122 56.6
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 2.5e-25 119.0 121 56.2
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 9.6e-25 117.1 122 55.7
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 2.8e-24 115.5 121 54.5
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 3.6e-24 115.2 122 54.9
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 3.6e-24 115.2 122 54.9
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 8.1e-24 114.0 121 53.7
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 5.3e-23 111.3 64 87.5
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 5.3e-23 111.3 64 87.5
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 5.3e-23 111.3 64 87.5
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 9.0e-23 110.5 73 76.7
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 2.0e-22 109.4 120 52.5
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 6.4e-21 104.4 63 82.5
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 1.4e-20 103.2 63 82.5
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.9e-20 102.8 64 78.1
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.2e-19 100.1 64 79.7
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 1.6e-19 99.8 64 81.2
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 6.0e-19 97.8 62 79.0
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 1.3e-18 96.7 64 78.1
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 1.7e-18 96.3 63 76.2
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 3.0e-18 95.5 63 76.2
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 3.0e-18 95.5 64 75.0
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 3.9e-18 95.1 64 76.6
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 3.9e-18 95.1 64 76.6
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 6.6e-18 94.4 63 76.2
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 8.7e-18 94.0 65 76.9
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.5e-17 93.2 63 74.6
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 1.9e-17 92.8 63 74.6
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 1.9e-17 92.8 63 77.8
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 2.5e-17 92.4 66 71.2
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 2.5e-17 92.4 63 74.6
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 2.5e-17 92.4 63 74.6
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 2.5e-17 92.4 64 73.4
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 3.3e-17 92.0 64 75.0
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 4.3e-17 91.7 64 71.9
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 9.6e-17 90.5 64 68.8
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.3e-16 90.1 88 60.2
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 1.3e-16 90.1 62 74.2
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 1.6e-16 89.7 64 73.4
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 2.1e-16 89.4 66 69.7
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 2.8e-16 89.0 63 73.0
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 3.6e-16 88.6 68 70.6
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 4.8e-16 88.2 64 70.3
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 4.8e-16 88.2 66 68.2
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 6.2e-16 87.8 69 65.2
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 1.1e-15 87.0 65 69.2
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.1e-15 87.0 65 69.2
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.1e-15 87.0 65 69.2
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.1e-15 87.0 68 69.1
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 1.1e-15 87.0 66 66.7
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.4e-15 85.9 64 70.3
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 3.1e-15 85.5 75 64.0
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 3.1e-15 85.5 65 67.7
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.3e-15 84.7 65 67.7
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.3e-15 84.7 66 66.7
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 6.9e-15 84.3 74 63.5
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 1.5e-14 83.2 66 72.7
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 2.0e-14 82.8 65 64.6
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 2.6e-14 82.4 58 72.4
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 2.6e-14 82.4 65 66.2
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 3.4e-14 82.0 66 66.7
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 4.5e-14 81.6 64 67.2
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.5e-14 81.6 64 67.2
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 4.5e-14 81.6 58 72.4
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.8e-14 81.3 65 64.6
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 9.9e-14 80.5 67 64.2
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 9.9e-14 80.5 64 65.6
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 9.9e-14 80.5 63 69.8
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 1.3e-13 80.1 64 64.1
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 1.3e-13 80.1 69 58.0
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 2.2e-13 79.3 63 65.1
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 2.2e-13 79.3 74 60.8
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 2.9e-13 79.0 68 57.4
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 3.8e-13 78.6 66 62.1
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.4e-12 76.6 65 63.1
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 1.9e-12 76.3 61 63.9
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.4e-12 75.9 63 68.3
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 3.2e-12 75.5 65 64.6
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.2e-12 75.5 63 68.3
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.2e-12 75.5 62 64.5
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 7.1e-12 74.3 65 64.6
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.3e-12 73.9 62 62.9
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 1.2e-11 73.6 64 64.1
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 4.6e-11 71.6 46 76.1
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.0e-11 71.2 65 61.5
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 7.9e-11 70.9 43 79.1
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 7.9e-11 70.9 76 55.3
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 1.8e-10 69.7 62 61.3
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 2.3e-10 69.3 57 70.2
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 3.0e-10 68.9 64 60.9
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 3.9e-10 68.6 62 59.7
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 8.7e-10 67.4 62 59.7
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.9e-09 66.2 63 58.7
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.9e-09 66.2 64 62.5
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 1.9e-09 66.2 64 62.5
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 2.5e-09 65.9 63 61.9
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 3.3e-09 65.5 61 57.4
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 5.6e-09 64.7 85 47.1
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 1.3e-08 63.5 64 56.2
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 1.6e-08 63.2 61 59.0
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 1.6e-08 63.2 50 66.0
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 2.1e-08 62.8 66 51.5
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 2.1e-08 62.8 58 60.3
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 2.8e-08 62.4 58 55.2
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 6.2e-08 61.2 66 51.5
DCAR_025920 Daucus carota HOM05D006100 ORTHO05D007539 6.2e-08 61.2 61 55.7
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 1.4e-07 60.1 46 63.0
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.8e-07 59.7 44 63.6
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 3.1e-07 58.9 71 53.5
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 4.0e-07 58.5 93 44.1
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 6.9e-07 57.8 106 42.5
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 1.5e-06 56.6 63 46.0
SalBow5G1753 Salvia bowleyana HOM05D006100 ORTHO05D007539 1.0e-05 53.9 45 64.4


User provided reference genes

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