Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.4e-127 459.5 222 100.0
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.4e-127 459.5 222 100.0
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.3e-125 452.2 217 100.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.6e-89 332.4 223 77.6
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.6e-89 332.4 223 77.6
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 4.5e-89 331.6 223 76.7
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.2e-88 329.3 223 77.1
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.1e-87 327.0 223 76.2
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 4.2e-87 325.1 226 77.4
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 5.5e-87 324.7 226 76.5
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 9.4e-87 323.9 226 75.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.6e-86 322.0 226 76.5
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 2.3e-85 319.3 226 74.8
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 6.7e-85 317.8 225 76.4
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.1e-82 310.5 212 76.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.1e-82 308.9 226 72.6
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-81 306.6 226 72.1
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-81 306.6 226 72.1
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 3.5e-81 305.4 226 71.7
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 3.8e-80 302.0 227 71.8
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 3.8e-80 302.0 218 75.2
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 8.5e-80 300.8 226 70.4
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 3.6e-78 295.4 224 67.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.7e-78 295.0 223 68.2
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.0e-77 293.9 228 68.4
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 5.2e-77 291.6 224 66.5
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.1e-74 283.9 224 66.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.8e-74 283.1 224 65.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.4e-74 282.7 224 65.6
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 3.1e-74 282.3 226 65.5
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.6e-73 280.0 224 65.6
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.0e-73 279.6 224 66.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.5e-73 278.5 223 64.6
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.0e-72 277.3 227 63.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.0e-72 277.3 227 63.0
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.0e-72 277.3 227 66.5
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.3e-72 276.9 227 63.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.3e-72 276.9 225 65.3
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.7e-72 276.6 223 63.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-72 276.6 227 63.0
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.8e-72 275.4 227 63.4
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 5.0e-72 275.0 223 64.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.9e-71 273.1 225 62.7
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.9e-71 273.1 225 63.1
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.9e-71 273.1 223 63.2
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.9e-71 273.1 225 63.1
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.9e-71 273.1 224 63.4
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 4.2e-71 271.9 225 62.7
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.2e-71 271.9 225 63.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 4.2e-71 271.9 223 63.2
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 4.2e-71 271.9 223 62.3
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 4.2e-71 271.9 225 63.6
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 7.2e-71 271.2 225 63.6
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 7.2e-71 271.2 227 64.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.2e-70 270.4 224 63.8
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.7e-70 269.2 225 62.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 4.7e-70 268.5 224 61.6
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.7e-70 268.5 227 64.3
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 4.7e-70 268.5 225 62.2
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 6.1e-70 268.1 225 63.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.0e-69 267.3 225 62.2
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.4e-69 266.9 195 67.2
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.8e-69 266.5 196 65.8
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.3e-69 266.2 224 62.5
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.3e-69 266.2 224 61.6
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.3e-69 266.2 227 62.1
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 4.0e-69 265.4 225 62.2
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.2e-69 265.0 242 59.9
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 8.8e-69 264.2 223 61.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.2e-68 263.8 195 67.7
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.5e-68 263.5 223 61.0
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.0e-68 263.1 223 61.9
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 3.4e-68 262.3 223 60.5
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 4.4e-68 261.9 223 61.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 5.7e-68 261.5 226 63.3
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.5e-68 261.2 227 62.6
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 7.5e-68 261.2 224 60.7
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 7.5e-68 261.2 223 61.0
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-67 260.4 195 66.2
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.7e-67 260.0 224 61.2
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 2.2e-67 259.6 223 61.4
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 6.3e-67 258.1 228 59.6
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.4e-66 256.9 226 60.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.8e-66 256.5 195 65.1
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.1e-66 255.4 226 61.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 4.1e-66 255.4 226 61.1
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.0e-66 254.6 197 66.0
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.2e-65 253.8 194 66.0
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-65 253.8 195 66.2
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 7.7e-65 251.1 200 62.5
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-64 250.8 227 59.9
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.7e-64 250.0 197 65.5
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.2e-64 249.6 194 63.9
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.2e-64 249.6 238 58.0
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.2e-64 249.6 227 59.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.5e-64 248.1 226 59.3
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.5e-64 247.7 223 59.2
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.9e-63 246.5 203 65.5
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.9e-63 246.5 225 58.7
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.2e-62 243.8 228 57.9
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 2.1e-62 243.0 234 56.8
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.7e-62 242.7 214 60.3
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.6e-62 242.3 225 57.8
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.6e-62 242.3 225 57.8
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.2e-61 238.4 195 61.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.5e-60 234.6 200 60.5
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.3e-59 233.8 205 61.0
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 4.9e-59 231.9 223 52.9
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 8.3e-59 231.1 183 64.5
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.8e-58 229.9 224 53.1
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-56 223.4 208 57.7
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.3e-56 223.0 301 44.2
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 3.8e-56 222.2 223 50.7
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.9e-55 219.9 198 57.1
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 7.3e-55 218.0 218 51.8
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 4.0e-53 212.2 221 52.9
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.8e-53 211.5 220 50.9
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.5e-52 210.3 224 50.9
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 8.3e-51 204.5 224 48.7
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.8e-50 203.4 225 53.3
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.8e-50 203.4 290 42.8
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 4.6e-49 198.7 222 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 8.6e-48 194.5 226 46.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 8.6e-48 194.5 184 52.7
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.5e-47 193.7 183 58.5
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 9.5e-47 191.0 172 58.1
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.8e-45 186.8 175 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.9e-42 176.8 199 48.2
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-40 171.0 174 54.0
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 5.0e-40 168.7 170 58.2
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-39 166.4 94 78.7
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 7.3e-39 164.9 199 50.3
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 9.5e-39 164.5 222 44.6
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.6e-36 156.4 182 48.4
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.4e-36 156.0 114 63.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.2e-35 153.3 160 53.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 3.9e-32 142.5 224 32.1
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 6.2e-30 135.2 234 32.9
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.2e-29 132.1 82 74.4
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 8.9e-29 131.3 168 44.6
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 6.4e-27 125.2 82 64.6
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 6.0e-25 118.6 135 47.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.1e-23 114.4 222 33.8
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 8.7e-16 88.2 95 51.6
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-13 81.3 143 35.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.2e-10 69.3 96 42.7
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.7e-09 66.6 75 57.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 5.6e-07 58.9 204 23.5
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 7.4e-07 58.5 136 33.8


User provided reference genes

Program Settings