Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 9.6e-73 276.9 162 100.0
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 9.6e-73 276.9 162 100.0
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 8.1e-72 273.9 162 99.4
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 8.1e-64 247.3 165 91.5
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 9.0e-63 243.8 166 90.4
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 2.9e-45 185.7 171 73.1
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 5.5e-44 181.4 172 69.2
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 5.5e-44 181.4 172 69.2
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 6.7e-42 174.5 171 63.7
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 1.3e-40 170.2 178 65.2
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 3.1e-39 165.6 177 61.6
BcaB01g03133 Brassica carinata HOM05D007264 ORTHO05D008639 3.9e-34 148.7 125 73.6
BcaB01g03134 Brassica carinata HOM05D007264 ORTHO05D008639 1.3e-32 143.7 178 57.3
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 2.8e-32 142.5 176 61.9
Thhalv10017315m.g Eutrema salsugineum HOM05D007264 ORTHO05D008639 6.5e-29 131.3 177 55.4
THA.LOC104800684 Tarenaya hassleriana HOM05D007264 ORTHO05D008639 1.4e-23 113.6 181 54.1
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 4.1e-23 112.1 175 48.0
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 7.0e-23 111.3 167 47.9
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 1.2e-22 110.5 172 46.5
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 2.0e-22 109.8 166 49.4
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 2.7e-22 109.4 175 48.6
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 1.3e-21 107.1 164 50.0
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 1.7e-21 106.7 171 45.6
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 1.7e-21 106.7 171 45.6
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 1.7e-21 106.7 171 45.6
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 2.9e-21 105.9 172 44.2
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 5.0e-21 105.1 168 44.6
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 1.5e-20 103.6 112 59.8
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 2.5e-20 102.8 167 44.9
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 4.2e-20 102.1 173 41.0
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 5.5e-20 101.7 151 49.0
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 9.4e-20 100.9 122 52.5
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.2e-19 100.5 110 56.4
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.2e-19 100.5 110 56.4
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 2.1e-19 99.8 163 46.0
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 3.6e-19 99.0 80 67.5
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 3.6e-19 99.0 82 67.1
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 4.7e-19 98.6 148 43.2
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 6.1e-19 98.2 115 55.7
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 8.0e-19 97.8 129 46.5
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 1.8e-18 96.7 147 43.5
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 3.0e-18 95.9 110 53.6
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 5.2e-18 95.1 105 54.3
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 5.2e-18 95.1 109 51.4
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 8.8e-18 94.4 80 65.0
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 8.8e-18 94.4 151 41.7
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 1.5e-17 93.6 105 63.8
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 1.5e-17 93.6 165 41.8
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 2.6e-17 92.8 78 70.5
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 4.4e-17 92.0 145 42.8
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 4.4e-17 92.0 82 64.6
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 5.7e-17 91.7 166 44.6
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 9.8e-17 90.9 82 61.0
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 9.8e-17 90.9 113 49.6
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 1.3e-16 90.5 85 61.2
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 3.7e-16 89.0 175 37.7
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 4.8e-16 88.6 157 40.8
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 6.3e-16 88.2 168 37.5
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 1.1e-15 87.4 73 69.9
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 1.4e-15 87.0 155 40.0
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 1.8e-15 86.7 132 46.2
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 1.8e-15 86.7 158 39.2
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 1.8e-15 86.7 158 39.2
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 4.1e-15 85.5 162 40.1
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 4.1e-15 85.5 172 41.3
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 5.4e-15 85.1 178 41.6
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 5.4e-15 85.1 156 42.9
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 5.4e-15 85.1 83 61.4
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 7.0e-15 84.7 138 44.9
PSO513G0105 Papaver somniferum HOM05D007264 ORTHO05D008639 7.0e-15 84.7 148 39.9
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 2.7e-14 82.8 139 44.6
Oeu002437.1 Olea europaea HOM05D007264 ORTHO05D008639 5.9e-14 81.6 114 43.9
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 1.0e-13 80.9 172 40.7
Oeu002436.1 Olea europaea HOM05D007264 ORTHO05D008639 1.0e-13 80.9 114 44.7
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 1.3e-13 80.5 162 40.1
Atru.chr3.3962 Acer truncatum HOM05D007264 ORTHO05D008639 1.7e-13 80.1 59 74.6
Glyma.13G338500 Glycine max HOM05D007264 ORTHO05D008639 1.7e-13 80.1 79 58.2
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 2.2e-13 79.7 159 40.9
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 2.9e-13 79.3 166 41.0
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 3.8e-13 79.0 157 40.8
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 1.1e-12 77.4 176 39.2
SGA_v2.0_scaffold111G31536 Striga asiatica HOM05D007264 ORTHO05D008639 4.2e-12 75.5 196 33.7
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 5.5e-12 75.1 80 56.2
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 5.5e-12 75.1 161 39.8
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 5.5e-12 75.1 153 36.6
AUR62001749 Chenopodium quinoa HOM05D007264 ORTHO05D008639 1.2e-11 73.9 136 43.4
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 3.6e-11 72.4 117 45.3
CDE04G3075 Ceratophyllum demersum HOM05D007264 ORTHO05D008639 3.6e-11 72.4 157 33.8
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 6.1e-11 71.6 166 35.5
Sc25g0001650 Simmondsia chinensis HOM05D007264 ORTHO05D008639 8.0e-11 71.2 82 52.4
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 4.0e-10 68.9 79 50.6
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 6.8e-10 68.2 160 36.2
unitig_899.g15261 Utricularia gibba HOM05D007264 ORTHO05D008639 1.5e-09 67.0 68 58.8
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 1.7e-08 63.5 134 43.3
TPR.G6833 Trifolium pratense HOM05D007264 ORTHO05D008639 3.7e-08 62.4 48 62.5
Phvul.L007743 Phaseolus vulgaris HOM05D007264 ORTHO05D008639 4.9e-08 62.0 79 48.1
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 6.3e-08 61.6 124 37.9
Psat5g287960 Pisum sativum HOM05D007264 ORTHO05D008639 1.1e-07 60.8 78 50.0
VMungo1080G0594 Vigna mungo HOM05D007264 ORTHO05D008639 1.4e-07 60.5 77 46.8
TAR369G0859 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.2e-06 57.4 109 41.3
Mapoly0102s0035 Marchantia polymorpha HOM05D007264 ORTHO05D008639 1.6e-06 57.0 122 32.8


User provided reference genes

Program Settings