Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p63630 Brassica napus HOM05D006120 ORTHO05D042482 2.6e-79 298.5 139 100.0
BolC2t12429H Brassica oleracea HOM05D006120 ORTHO05D042482 1.2e-66 256.5 120 100.0
BraA09t36539Z Brassica rapa HOM05D006120 ORTHO05D007913 1.1e-27 127.1 84 75.0
Thhalv10003902m.g Eutrema salsugineum HOM05D006120 ORTHO05D007913 1.4e-27 126.7 84 73.8
BcaC04g23275 Brassica carinata HOM05D006120 ORTHO05D007913 1.8e-27 126.3 83 74.7
BolC9t53930H Brassica oleracea HOM05D006120 ORTHO05D007913 1.8e-27 126.3 83 74.7
C09p10300 Brassica napus HOM05D006120 ORTHO05D007913 2.3e-27 125.9 84 73.8
Sp2g27940 Schrenkiella parvula HOM05D006120 ORTHO05D007913 6.8e-27 124.4 84 72.6
BcaB04g19998 Brassica carinata HOM05D006120 ORTHO05D007913 8.9e-27 124.0 84 73.8
A09p08880 Brassica napus HOM05D006120 ORTHO05D007913 1.2e-26 123.6 84 72.6
Carub.0008s2569 Capsella rubella HOM05D006120 ORTHO05D007913 2.9e-25 119.0 85 69.4
CARHR278870 Cardamine hirsuta HOM05D006120 ORTHO05D007913 1.4e-24 116.7 84 67.9
AT5G64860 Arabidopsis thaliana HOM05D006120 ORTHO05D007913 1.9e-24 116.3 84 69.0
THA.LOC104818477 Tarenaya hassleriana HOM05D006120 ORTHO05D007913 5.1e-22 108.2 84 64.3
Aa31LG1G17070 Aethionema arabicum HOM05D006120 ORTHO05D007913 4.3e-21 105.1 87 62.1
Atru.chr4.351 Acer truncatum HOM05D006120 ORTHO05D007913 1.2e-20 103.6 84 60.7
Prupe.6G173200 Prunus persica HOM05D006120 ORTHO05D007913 6.2e-20 101.3 84 60.7
Sabra07G0068400 Salix brachista HOM05D006120 ORTHO05D007913 6.2e-20 101.3 84 58.3
Potri.007G081400 Populus trichocarpa HOM05D006120 ORTHO05D007913 1.1e-19 100.5 84 59.5
MD15G1333300 Malus domestica HOM05D006120 ORTHO05D007913 1.8e-19 99.8 85 58.8
Solyc04g053120.3 Solanum lycopersicum HOM05D006120 ORTHO05D007913 1.8e-19 99.8 85 57.6
Peaxi162Scf00323g00517 Petunia axillaris HOM05D006120 ORTHO05D007913 2.4e-19 99.4 85 57.6
GSVIVG01022223001 Vitis vinifera HOM05D006120 ORTHO05D007913 3.1e-19 99.0 84 56.0
ClCG02G013390 Citrullus lanatus HOM05D006120 ORTHO05D007913 4.0e-19 98.6 84 57.1
Migut.L00074 Erythranthe guttata HOM05D006120 ORTHO05D007913 4.0e-19 98.6 85 56.5
PGSC0003DMG400016589 Solanum tuberosum HOM05D006120 ORTHO05D007913 5.2e-19 98.2 85 56.5
CSS0019172 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 6.8e-19 97.8 84 59.5
SGA_v2.0_scaffold34G13619 Striga asiatica HOM05D006120 ORTHO05D007913 6.8e-19 97.8 83 59.0
RcHm_v2.0_Chr2g0116371 Rosa chinensis HOM05D006120 ORTHO05D007913 8.9e-19 97.4 84 57.1
Sopen04g023470 Solanum pennellii HOM05D006120 ORTHO05D007913 8.9e-19 97.4 85 56.5
Ciclev10025236m.g Citrus clementina HOM05D006120 ORTHO05D007913 1.2e-18 97.1 84 57.1
Actinidia05860 Actinidia chinensis HOM05D006120 ORTHO05D007913 1.5e-18 96.7 82 59.8
CSS0049107 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 1.5e-18 96.7 84 58.3
HanXRQChr15g0484401 Helianthus annuus HOM05D006120 ORTHO05D007913 1.5e-18 96.7 83 57.8
Lsat_1_v5_gn_2_67361 Lactuca sativa HOM05D006120 ORTHO05D007913 1.5e-18 96.7 84 57.1
FAN23G0349 Fragaria x ananassa HOM05D006120 ORTHO05D007913 3.4e-18 95.5 84 56.0
SalBow5G0625 Salvia bowleyana HOM05D006120 ORTHO05D007913 3.4e-18 95.5 80 60.0
SalBow5G3003 Salvia bowleyana HOM05D006120 ORTHO05D007913 3.4e-18 95.5 80 60.0
Thecc.01G112500 Theobroma cacao HOM05D006120 ORTHO05D007913 3.4e-18 95.5 84 56.0
TWI53G1580 Tripterygium wilfordii HOM05D006120 ORTHO05D007913 3.4e-18 95.5 84 54.8
CAN.G276.3 Capsicum annuum HOM05D006120 ORTHO05D007913 4.4e-18 95.1 85 55.3
ECA238G0742 Erigeron canadensis HOM05D006120 ORTHO05D007913 4.4e-18 95.1 85 56.5
PGR004G1464 Punica granatum HOM05D006120 ORTHO05D007913 4.4e-18 95.1 84 52.4
TPR.G23750 Trifolium pratense HOM05D006120 ORTHO05D007913 4.4e-18 95.1 84 54.8
CiPaw.04G092000 Carya illinoinensis HOM05D006120 ORTHO05D007913 5.8e-18 94.7 84 53.6
Ca_16892_v3 Cicer arietinum L. HOM05D006120 ORTHO05D007913 5.8e-18 94.7 84 52.4
MELO3C020949.2 Cucumis melo HOM05D006120 ORTHO05D007913 5.8e-18 94.7 84 53.6
Aqoxy6G00482 Aquilegia oxysepala HOM05D006120 ORTHO05D007913 7.6e-18 94.4 82 56.1
MSTRG.15748 Avicennia marina HOM05D006120 ORTHO05D007913 7.6e-18 94.4 84 60.7
Lj4C877G13 Lonicera japonica HOM05D006120 ORTHO05D007913 7.6e-18 94.4 83 55.4
Rhsim10G0151000 Rhododendron simsii HOM05D006120 ORTHO05D007913 7.6e-18 94.4 82 58.5
CsaV3_2G017550 Cucumis sativus L. HOM05D006120 ORTHO05D007913 9.9e-18 94.0 83 54.2
DCAR_010077 Daucus carota HOM05D006120 ORTHO05D007913 9.9e-18 94.0 83 51.8
Eucgr.I00325 Eucalyptus grandis HOM05D006120 ORTHO05D007913 9.9e-18 94.0 83 56.6
FvH4_1g22230 Fragaria vesca HOM05D006120 ORTHO05D007913 9.9e-18 94.0 84 54.8
Lalb_Chr08g0238881 Lupinus albus HOM05D006120 ORTHO05D007913 9.9e-18 94.0 84 54.8
Nn1g05190 Nelumbo nucifera HOM05D006120 ORTHO05D007913 9.9e-18 94.0 84 52.4
unitig_88.g27738 Utricularia gibba HOM05D006120 ORTHO05D007913 9.9e-18 94.0 85 54.1
Haze_25037 Corylus avellana HOM05D006120 ORTHO05D007913 1.3e-17 93.6 84 52.4
Manes.12G142500 Manihot esculenta HOM05D006120 ORTHO05D007913 1.3e-17 93.6 83 54.2
Nitab4.5_0000471g0040 Nicotiana tabacum HOM05D006120 ORTHO05D007913 1.3e-17 93.6 84 56.0
FAN19G1919 Fragaria x ananassa HOM05D006120 ORTHO05D007913 1.7e-17 93.2 84 54.8
FAN28G2353 Fragaria x ananassa HOM05D006120 ORTHO05D007913 1.7e-17 93.2 84 56.0
Sed0002401 Sechium edule HOM05D006120 ORTHO05D007913 2.2e-17 92.8 84 54.8
Medtr3g094840 Medicago truncatula HOM05D006120 ORTHO05D007913 2.9e-17 92.4 83 53.0
Psat5g065400 Pisum sativum HOM05D006120 ORTHO05D007913 2.9e-17 92.4 81 53.1
TAR628G0801 Trochodendron aralioides HOM05D006120 ORTHO05D007913 2.9e-17 92.4 84 53.6
BcaC03g18286 Brassica carinata HOM05D001885 ORTHO05D001871 3.8e-17 92.0 47 93.6
BcaC03g18288 Brassica carinata HOM05D001885 ORTHO05D001871 3.8e-17 92.0 47 93.6
CANSAT01G3221 Cannabis sativa HOM05D006120 ORTHO05D007913 3.8e-17 92.0 84 54.8
QL06p032201 Quercus lobata HOM05D006120 ORTHO05D007913 4.9e-17 91.7 84 53.6
arahy.Tifrunner.gnm1.ann1.AFE07A Arachis hypogaea HOM05D006120 ORTHO05D007913 6.4e-17 91.3 84 53.6
arahy.Tifrunner.gnm1.ann1.UD5YJS Arachis hypogaea HOM05D006120 ORTHO05D007913 6.4e-17 91.3 84 53.6
arahy.Tifrunner.gnm1.ann1.Y3LRN9 Arachis hypogaea HOM05D006120 ORTHO05D007913 6.4e-17 91.3 84 53.6
Hma1.2p1_0375F.1_g138700 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 6.4e-17 91.3 83 56.6
Lj1g0008968 Lotus japonicus HOM05D006120 ORTHO05D007913 1.4e-16 90.1 84 50.0
Glyma.06G146400 Glycine max HOM05D006120 ORTHO05D007913 2.4e-16 89.4 84 51.2
Cc00_g25280 Coffea canephora HOM05D006120 ORTHO05D007913 3.2e-16 89.0 83 54.2
Cc03_g11750 Coffea canephora HOM05D006120 ORTHO05D007913 3.2e-16 89.0 83 54.2
Duzib147G0722 Durio zibethinus HOM05D006120 ORTHO05D007913 4.2e-16 88.6 87 52.9
Glyma.04G219500 Glycine max HOM05D006120 ORTHO05D007913 4.2e-16 88.6 84 51.2
Gohir.D03G045900 Gossypium hirsutum HOM05D006120 ORTHO05D007913 4.2e-16 88.6 84 53.6
Gorai.003G047100 Gossypium raimondii HOM05D006120 ORTHO05D007913 4.2e-16 88.6 84 53.6
Phvul.009G139500 Phaseolus vulgaris HOM05D006120 ORTHO05D007913 4.2e-16 88.6 84 52.4
AUR62016277 Chenopodium quinoa HOM05D006120 ORTHO05D007913 5.4e-16 88.2 85 49.4
HPP92_016849 Vanilla planifolia HOM05D006120 ORTHO05D007913 5.4e-16 88.2 83 50.6
MBI05_g43693_MAGBIO Magnolia biondii HOM05D006120 ORTHO05D007913 7.1e-16 87.8 88 53.4
AUR62003308 Chenopodium quinoa HOM05D006120 ORTHO05D007913 9.3e-16 87.4 83 49.4
Hund19657 Selenicereus undatus HOM05D006120 ORTHO05D007913 1.2e-15 87.0 82 50.0
Zm00001eb328070 Zea mays HOM05D006120 ORTHO05D007913 1.6e-15 86.7 83 53.0
Os07g0627000 Oryza sativa ssp. japonica HOM05D006120 ORTHO05D007913 3.5e-15 85.5 81 53.1
CDE09G0932 Ceratophyllum demersum HOM05D006120 ORTHO05D007913 4.6e-15 85.1 83 51.8
CDE11G1197 Ceratophyllum demersum HOM05D006120 ORTHO05D007913 8.7e-14 80.9 83 49.4
COL.COLO4_11015 Corchorus olitorius HOM05D006120 ORTHO05D007913 3.3e-13 79.0 53 69.8
SMO164G0070 Selaginella moellendorffii HOM05D006120 ORTHO05D007913 4.3e-13 78.6 81 46.9
ATR0564G344 Amborella trichopoda HOM05D006120 ORTHO05D007913 7.3e-13 77.8 84 46.4
Pp3c20_17800 Physcomitrium patens HOM05D006120 ORTHO05D007913 8.1e-12 74.3 85 41.2
Ah.02g125980 Amaranthus hybridus HOM05D006120 ORTHO05D007913 1.4e-11 73.6 64 56.2
AagrBONN_evm.TU.Sc2ySwM_362.2612 Anthoceros agrestis HOM05D006120 ORTHO05D007913 1.4e-11 73.6 82 39.0
vmacro12904 Vaccinium macrocarpon HOM05D006120 ORTHO05D007913 1.4e-11 73.6 53 62.3
Pp3c8_6000 Physcomitrium patens HOM05D006120 ORTHO05D007913 9.0e-11 70.9 83 42.2
Mapoly0007s0077 Marchantia polymorpha HOM05D006120 ORTHO05D007913 2.0e-10 69.7 102 35.3
Pp3c6_28760 Physcomitrium patens HOM05D006120 ORTHO05D007913 3.4e-10 68.9 81 38.3
Nn5g28915 Nelumbo nucifera HOM05D006120 ORTHO05D007913 7.6e-10 67.8 66 50.0
Hma1.2p1_0375F.1_g138730 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 1.3e-09 67.0 66 53.0
A02p43540 Brassica napus HOM05D006120 ORTHO05D096983 6.4e-09 64.7 34 91.2
SEGI_23685 Sequoiadendron giganteum HOM05D006120 ORTHO05D007913 4.6e-07 58.5 64 43.8
MCO01G332 Micromonas commoda HOM05D006120 ORTHO05D007913 1.0e-06 57.4 72 41.7
EL10Ac6g14753 Beta vulgaris HOM05D006120 ORTHO05D007913 1.7e-06 56.6 81 37.0


User provided reference genes

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