Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 1.8e-37 158.7 78 100.0
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.8e-37 158.7 78 100.0
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 5.5e-34 147.1 77 92.2
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 2.7e-28 128.3 76 78.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 3.2e-26 121.3 78 75.6
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 9.4e-26 119.8 77 74.0
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 9.4e-26 119.8 77 74.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 9.4e-26 119.8 78 74.4
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.7e-25 118.2 76 72.4
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 3.6e-25 117.9 76 71.1
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 2.3e-24 115.2 76 69.7
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 6.8e-24 113.6 76 67.1
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 2.0e-23 112.1 76 68.4
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.6e-23 111.7 65 84.6
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 2.6e-23 111.7 78 69.2
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.3e-19 99.4 76 59.2
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 1.7e-19 99.0 73 63.0
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 3.8e-19 97.8 77 61.0
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 6.6e-19 97.1 73 58.9
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 8.6e-19 96.7 78 57.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 1.5e-18 95.9 73 60.3
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 1.5e-18 95.9 73 63.0
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 1.5e-18 95.9 74 62.2
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 1.5e-18 95.9 73 61.6
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 2.5e-18 95.1 73 57.5
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.5e-18 95.1 73 57.5
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.5e-18 95.1 73 57.5
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 2.5e-18 95.1 73 57.5
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 3.3e-18 94.7 73 63.0
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 4.2e-18 94.4 75 58.7
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.5e-18 94.0 73 56.2
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 5.5e-18 94.0 73 61.6
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 9.5e-18 93.2 76 56.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.2e-17 92.8 73 61.6
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 1.2e-17 92.8 73 60.3
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.6e-17 92.4 73 58.9
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 1.6e-17 92.4 73 58.9
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 1.6e-17 92.4 76 57.9
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 2.1e-17 92.0 76 56.6
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 2.1e-17 92.0 73 57.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.1e-17 92.0 73 56.2
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 2.1e-17 92.0 73 57.5
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 3.6e-17 91.3 73 57.5
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 4.7e-17 90.9 72 61.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 6.1e-17 90.5 73 57.5
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 6.1e-17 90.5 76 55.3
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 1.0e-16 89.7 73 58.9
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 1.8e-16 89.0 73 57.5
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 2.3e-16 88.6 72 58.3
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 2.3e-16 88.6 73 54.8
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 3.0e-16 88.2 76 56.6
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 3.0e-16 88.2 70 58.6
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 4.0e-16 87.8 78 52.6
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 6.8e-16 87.0 73 57.5
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 6.8e-16 87.0 73 56.2
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 6.8e-16 87.0 72 59.7
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 8.9e-16 86.7 73 54.8
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 2.0e-15 85.5 79 53.2
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.6e-15 85.1 72 55.6
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 3.4e-15 84.7 70 58.6
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 5.7e-15 84.0 71 54.9
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 9.8e-15 83.2 76 52.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 9.8e-15 83.2 73 49.3
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 1.3e-14 82.8 78 50.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 2.2e-14 82.0 73 52.1
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 2.2e-14 82.0 73 52.1
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 8.3e-14 80.1 73 49.3
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 1.4e-13 79.3 74 50.0
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 3.2e-13 78.2 73 47.9
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 3.2e-13 78.2 73 47.9
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 4.1e-13 77.8 73 47.9
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 4.1e-13 77.8 73 46.6
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 4.1e-13 77.8 73 52.1
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 5.4e-13 77.4 70 47.1
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 5.4e-13 77.4 73 46.6
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 7.0e-13 77.0 73 53.4
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 9.2e-13 76.6 71 53.5
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 1.2e-12 76.3 72 51.4
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 1.6e-12 75.9 73 47.9
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 1.6e-12 75.9 73 49.3
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 2.0e-12 75.5 73 47.9
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 2.0e-12 75.5 74 48.6
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.5e-12 74.7 74 47.3
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 4.6e-12 74.3 73 49.3
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 4.6e-12 74.3 73 50.7
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 7.8e-12 73.6 73 49.3
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 1.7e-11 72.4 73 47.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.3e-11 72.0 76 43.4
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.3e-11 72.0 76 43.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.3e-11 72.0 76 43.4
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 2.9e-11 71.6 73 45.2
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 3.9e-11 71.2 73 47.9
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 6.6e-11 70.5 73 46.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 1.5e-10 69.3 73 47.9
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 3.3e-10 68.2 68 44.1
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 3.3e-10 68.2 72 45.8
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.3e-10 68.2 73 46.6
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 9.5e-10 66.6 71 49.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 2.1e-09 65.5 67 47.8
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 4.7e-09 64.3 76 42.1
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 1.4e-08 62.8 67 46.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 4.0e-08 61.2 74 37.8
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 5.2e-08 60.8 58 51.7
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 6.8e-08 60.5 67 44.8
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.2e-07 59.7 52 50.0
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 2.9e-06 55.1 59 44.1


User provided reference genes

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