Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p63220 Brassica napus HOM05D003662 ORTHO05D001824 2.7e-177 625.2 309 100.0
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 9.6e-98 360.9 494 46.0
BcaC03g18249 Brassica carinata HOM05D003662 ORTHO05D001824 2.4e-96 356.3 432 51.2
BolC3t18469H Brassica oleracea HOM05D003662 ORTHO05D001824 1.7e-94 350.1 501 43.9
BraA06t26028Z Brassica rapa HOM05D003662 ORTHO05D001824 2.9e-94 349.4 502 44.2
C03p62080 Brassica napus HOM05D003662 ORTHO05D001824 8.4e-94 347.8 501 43.7
A06p30890 Brassica napus HOM05D003662 ORTHO05D001824 2.5e-93 346.3 502 44.0
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 1.6e-92 343.6 485 45.8
BcaC01g02674 Brassica carinata HOM05D003662 ORTHO05D001824 2.7e-92 342.8 495 43.8
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 3.7e-89 332.4 495 43.4
Thhalv10003831m.g Eutrema salsugineum HOM05D003662 ORTHO05D001824 7.7e-87 324.7 506 42.5
AL8G41440 Arabidopsis lyrata HOM05D003662 ORTHO05D001824 6.9e-80 301.6 500 41.6
AT5G64170 Arabidopsis thaliana HOM05D003662 ORTHO05D001824 5.0e-78 295.4 501 40.7
Carub.0008s2496 Capsella rubella HOM05D003662 ORTHO05D001824 3.3e-74 282.7 503 40.2
CARHR278080 Cardamine hirsuta HOM05D003662 ORTHO05D001824 5.3e-72 275.4 499 39.7
BolC2t12391H Brassica oleracea HOM05D003662 ORTHO05D001824 4.8e-65 252.3 422 42.2
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 2.5e-61 240.0 506 36.8
THA.LOC104799974 Tarenaya hassleriana HOM05D003662 ORTHO05D001824 7.7e-55 218.4 510 33.3
BolC9t53878H Brassica oleracea HOM05D003662 ORTHO05D001824 5.9e-39 165.6 159 60.4
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 7.1e-24 115.5 399 28.3
CsaV3_4G009390 Cucumis sativus L. HOM05D003662 ORTHO05D001824 3.3e-21 106.7 418 27.5
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 4.3e-21 106.3 418 26.8
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 2.1e-20 104.0 499 25.1
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 6.2e-20 102.4 437 27.2
Atru.chr6.854 Acer truncatum HOM05D003662 ORTHO05D001824 8.1e-20 102.1 106 52.8
Atru.chr6.858 Acer truncatum HOM05D003662 ORTHO05D001824 8.1e-20 102.1 106 52.8
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 4.0e-19 99.8 107 52.3
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.5e-18 97.8 100 52.0
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 1.5e-18 97.8 100 52.0
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 2.0e-18 97.4 414 26.6
Gohir.A12G014800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.0e-18 97.4 108 50.9
Actinidia00263 Actinidia chinensis HOM05D003662 ORTHO05D001824 2.6e-18 97.1 488 26.2
Cpa.g.sc42.69 Carica papaya HOM05D003662 ORTHO05D001824 2.6e-18 97.1 98 52.0
ClCG10G009220 Citrullus lanatus HOM05D003662 ORTHO05D001824 2.6e-18 97.1 424 26.4
Gohir.D12G015200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.6e-18 97.1 108 50.9
Gorai.008G015300 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.6e-18 97.1 108 50.9
QL11p020558 Quercus lobata HOM05D003662 ORTHO05D001824 3.4e-18 96.7 309 32.0
Duzib132G0110 Durio zibethinus HOM05D003662 ORTHO05D001824 4.4e-18 96.3 108 50.9
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 7.6e-18 95.5 216 33.8
TWI14G0069 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 7.6e-18 95.5 401 26.9
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 9.9e-18 95.1 107 48.6
Gohir.A13G066101 Gossypium hirsutum HOM05D003662 ORTHO05D001824 9.9e-18 95.1 485 24.3
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.3e-17 94.7 100 50.0
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 2.2e-17 94.0 132 44.7
AUR62010118 Chenopodium quinoa HOM05D003662 ORTHO05D001824 2.2e-17 94.0 110 50.0
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.2e-17 94.0 102 48.0
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.2e-17 94.0 102 48.0
Gohir.A13G066800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.8e-17 93.2 102 48.0
PGR042G2509 Punica granatum HOM05D003662 ORTHO05D001824 3.8e-17 93.2 101 47.5
Eucgr.G00771 Eucalyptus grandis HOM05D003662 ORTHO05D001824 4.9e-17 92.8 103 44.7
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 6.4e-17 92.4 99 49.5
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 6.4e-17 92.4 192 35.9
GSVIVG01003080001 Vitis vinifera HOM05D003662 ORTHO05D001824 8.4e-17 92.0 156 39.1
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 1.1e-16 91.7 104 48.1
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 2.4e-16 90.5 153 37.9
Dinv24197 Davidia involucrata HOM05D003662 ORTHO05D001824 3.2e-16 90.1 149 39.6
Potri.001G205800 Populus trichocarpa HOM05D003662 ORTHO05D001824 3.2e-16 90.1 100 50.0
Hma1.2p1_0704F.1_g206720 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 4.1e-16 89.7 168 38.1
Sed0005558 Sechium edule HOM05D003662 ORTHO05D001824 5.4e-16 89.4 416 25.0
Lsat_1_v5_gn_5_107161 Lactuca sativa HOM05D003662 ORTHO05D001824 2.7e-15 87.0 308 29.9
Nitab4.5_0003174g0040 Nicotiana tabacum HOM05D003662 ORTHO05D001824 4.6e-15 86.3 78 56.4
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 4.6e-15 86.3 91 46.2
Sabra01G0157900 Salix brachista HOM05D003662 ORTHO05D001824 4.6e-15 86.3 105 51.4
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 6.0e-15 85.9 102 45.1
AUR62013113 Chenopodium quinoa HOM05D003662 ORTHO05D001824 1.0e-14 85.1 304 27.0
C09p09670 Brassica napus HOM05D003662 ORTHO05D001824 1.3e-14 84.7 158 41.8
Haze_10685 Corylus avellana HOM05D003662 ORTHO05D001824 1.3e-14 84.7 162 34.0
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 1.7e-14 84.3 101 49.5
Lj5A240T38 Lonicera japonica HOM05D003662 ORTHO05D001824 1.7e-14 84.3 198 30.8
Actinidia23991 Actinidia chinensis HOM05D003662 ORTHO05D001824 3.0e-14 83.6 98 50.0
GSVIVG01003081001 Vitis vinifera HOM05D003662 ORTHO05D001824 3.9e-14 83.2 134 39.6
TAR381G1495 Trochodendron aralioides HOM05D003662 ORTHO05D001824 5.1e-14 82.8 91 48.4
Nitab4.5_0003858g0070 Nicotiana tabacum HOM05D003662 ORTHO05D001824 8.6e-14 82.0 78 53.8
Peaxi162Scf00001g00023 Petunia axillaris HOM05D003662 ORTHO05D001824 1.1e-13 81.6 78 53.8
CiPaw.05G036400 Carya illinoinensis HOM05D003662 ORTHO05D001824 1.5e-13 81.3 92 47.8
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.5e-13 81.3 91 49.5
Nn5g30130 Nelumbo nucifera HOM05D003662 ORTHO05D001824 3.3e-13 80.1 78 56.4
Oeu011776.1 Olea europaea HOM05D003662 ORTHO05D001824 7.3e-13 79.0 101 42.6
Lj9A354G33 Lonicera japonica HOM05D003662 ORTHO05D001824 9.6e-13 78.6 108 42.6
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 1.2e-12 78.2 92 48.9
TAR628G0445 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.6e-12 77.8 91 48.4
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 2.8e-12 77.0 77 51.9
Cpa.g.sc42.71 Carica papaya HOM05D003662 ORTHO05D001824 3.6e-12 76.6 69 58.0
Sed0006995 Sechium edule HOM05D003662 ORTHO05D001824 3.6e-12 76.6 99 44.4
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 3.6e-12 76.6 448 25.2
MBI05_g15584_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 8.1e-12 75.5 355 25.1
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 8.1e-12 75.5 127 40.2
SalBow5G0541 Salvia bowleyana HOM05D003662 ORTHO05D001824 8.1e-12 75.5 172 32.6
Glyma.08G073300 Glycine max HOM05D003662 ORTHO05D001824 1.1e-11 75.1 143 36.4
VMungo0540G1102 Vigna mungo HOM05D003662 ORTHO05D001824 1.1e-11 75.1 156 36.5
ECA240G2352 Erigeron canadensis HOM05D001416 ORTHO05D002549 1.8e-11 74.3 62 61.3
Sopen01g047650 Solanum pennellii HOM05D003662 ORTHO05D001824 1.8e-11 74.3 110 41.8
Lsat_1_v5_gn_9_117361 Lactuca sativa HOM05D003662 ORTHO05D001824 2.4e-11 73.9 264 28.8
Solyc01g105120.4 Solanum lycopersicum HOM05D003662 ORTHO05D001824 2.4e-11 73.9 78 52.6
unitig_749.g14155 Utricularia gibba HOM05D003662 ORTHO05D001824 2.4e-11 73.9 225 32.4
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 3.1e-11 73.6 91 47.3
Lj4g0005319 Lotus japonicus HOM05D003662 ORTHO05D001824 4.0e-11 73.2 130 38.5
Peaxi162Scf00152g01016 Petunia axillaris HOM05D003662 ORTHO05D001824 6.9e-11 72.4 109 40.4
Rhsim11G0136400 Rhododendron simsii HOM05D003662 ORTHO05D001824 6.9e-11 72.4 146 34.2
TPR.G13626 Trifolium pratense HOM05D003662 ORTHO05D001824 6.9e-11 72.4 104 42.3
PGSC0003DMG400012562 Solanum tuberosum HOM05D003662 ORTHO05D001824 8.9e-11 72.0 110 40.9
arahy.Tifrunner.gnm1.ann1.KQY3HF Arachis hypogaea HOM05D003662 ORTHO05D001824 1.2e-10 71.6 123 37.4
arahy.Tifrunner.gnm1.ann1.TKBB16 Arachis hypogaea HOM05D003662 ORTHO05D001824 1.2e-10 71.6 123 37.4
SalBow6G1900 Salvia bowleyana HOM05D003662 ORTHO05D001824 1.2e-10 71.6 74 48.6
SalBow6G5751 Salvia bowleyana HOM05D003662 ORTHO05D001824 1.2e-10 71.6 74 48.6
Glyma.05G118300 Glycine max HOM05D003662 ORTHO05D001824 1.5e-10 71.2 126 35.7
Sc08g0003380 Simmondsia chinensis HOM05D003662 ORTHO05D001824 1.5e-10 71.2 326 27.6
vmacro01822 Vaccinium macrocarpon HOM05D003662 ORTHO05D001824 2.0e-10 70.9 83 48.2
MSTRG.16578 Avicennia marina HOM05D003662 ORTHO05D001824 2.6e-10 70.5 78 46.2
Lj4g0001073 Lotus japonicus HOM05D003662 ORTHO05D001824 2.6e-10 70.5 130 37.7
Lj4g0002764 Lotus japonicus HOM05D003662 ORTHO05D001824 2.6e-10 70.5 127 36.2
HanXRQChr09g0249611 Helianthus annuus HOM05D003662 ORTHO05D001824 3.4e-10 70.1 381 24.9
HanXRQChr16g0514001 Helianthus annuus HOM05D003662 ORTHO05D001824 3.4e-10 70.1 67 53.7
Hma1.2p1_0522F.1_g171610 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 3.4e-10 70.1 57 61.4
CAN.G523.76 Capsicum annuum HOM05D003662 ORTHO05D001824 4.4e-10 69.7 110 40.0
Ca_00131_v3 Cicer arietinum L. HOM05D003662 ORTHO05D001824 9.9e-10 68.6 92 41.3
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 9.9e-10 68.6 106 41.5
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 9.9e-10 68.6 105 40.0
HanXRQChr03g0066941 Helianthus annuus HOM05D003662 ORTHO05D001824 9.9e-10 68.6 390 25.1
SGA_v2.0_scaffold332G48962 Striga asiatica HOM05D003662 ORTHO05D001824 9.9e-10 68.6 79 51.9
HanXRQChr10g0295841 Helianthus annuus HOM05D003662 ORTHO05D001824 1.3e-09 68.2 75 48.0
Medtr2g008750 Medicago truncatula HOM05D003662 ORTHO05D001824 1.3e-09 68.2 135 34.8
arahy.Tifrunner.gnm1.ann1.9W20Y7 Arachis hypogaea HOM05D003662 ORTHO05D001824 1.7e-09 67.8 208 29.3
Lalb_Chr20g0123061 Lupinus albus HOM05D003662 ORTHO05D001824 1.7e-09 67.8 92 42.4
Medtr4g094248 Medicago truncatula HOM05D003662 ORTHO05D001824 2.2e-09 67.4 136 36.0
Ca_18346_v3 Cicer arietinum L. HOM05D003662 ORTHO05D001824 4.9e-09 66.2 126 37.3
arahy.Tifrunner.gnm1.ann1.R9BSSR Arachis hypogaea HOM05D003662 ORTHO05D001824 6.4e-09 65.9 74 47.3
ECA234G0654 Erigeron canadensis HOM05D000867 ORTHO05D000864 6.4e-09 65.9 420 22.9
Psat1g216760 Pisum sativum HOM05D003662 ORTHO05D001824 6.4e-09 65.9 108 38.9
arahy.Tifrunner.gnm1.ann1.LSE6V3 Arachis hypogaea HOM05D003662 ORTHO05D001824 1.1e-08 65.1 78 46.2
Migut.B00615 Erythranthe guttata HOM05D003662 ORTHO05D001824 1.4e-08 64.7 90 43.3
MSTRG.27792 Avicennia marina HOM05D003662 ORTHO05D001824 3.2e-08 63.5 121 34.7
PGSC0003DMG400011508 Solanum tuberosum HOM05D003662 ORTHO05D001824 3.2e-08 63.5 88 43.2
SGA_v2.0_scaffold83G26297 Striga asiatica HOM05D003662 ORTHO05D001824 3.2e-08 63.5 62 56.5
DCAR_001790 Daucus carota HOM05D003662 ORTHO05D001824 4.2e-08 63.2 85 38.8
Lj6g0024827 Lotus japonicus HOM05D003662 ORTHO05D001824 4.2e-08 63.2 62 53.2
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 4.2e-08 63.2 402 26.6
Psat7g098600 Pisum sativum HOM05D003662 ORTHO05D001824 4.2e-08 63.2 153 32.0
Lalb_Chr10g0097751 Lupinus albus HOM05D003662 ORTHO05D001824 5.4e-08 62.8 204 31.9
Lalb_Chr17g0340141 Lupinus albus HOM05D003662 ORTHO05D001824 7.1e-08 62.4 104 39.4
Solyc04g009050.4 Solanum lycopersicum HOM05D003662 ORTHO05D001824 7.1e-08 62.4 88 42.0
arahy.Tifrunner.gnm1.ann1.EJN9A6 Arachis hypogaea HOM05D003662 ORTHO05D001824 2.1e-07 60.8 74 45.9
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 2.1e-07 60.8 100 40.0
DCAR_021854 Daucus carota HOM05D003662 ORTHO05D001824 4.6e-07 59.7 220 29.5
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 7.8e-07 58.9 85 42.4
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 1.7e-06 57.8 96 34.4
MSTRG.5266 Avicennia marina HOM05D003662 ORTHO05D001824 3.0e-06 57.0 131 29.8
TPR.G13600 Trifolium pratense HOM05D003662 ORTHO05D001824 3.0e-06 57.0 76 43.4
Nitab4.5_0000078g0010 Nicotiana tabacum HOM05D003662 ORTHO05D001824 3.9e-06 56.6 140 32.9
Peaxi162Scf00003g03637 Petunia axillaris HOM05D003662 ORTHO05D001824 3.9e-06 56.6 104 42.3
Psat3g119640 Pisum sativum HOM05D003662 ORTHO05D001824 3.9e-06 56.6 78 46.2
unitig_578.g15971 Utricularia gibba HOM05D003662 ORTHO05D001824 3.9e-06 56.6 79 44.3
Sopen04g004230 Solanum pennellii HOM05D003662 ORTHO05D001824 6.6e-06 55.8 91 36.3
Nitab4.5_0005015g0020 Nicotiana tabacum HOM05D003662 ORTHO05D001824 8.7e-06 55.5 128 33.6


User provided reference genes

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