Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18215 Brassica carinata HOM05D023060 ORTHO05D020048 4.0e-26 120.6 56 100.0
C02p62830 Brassica napus HOM05D000018 ORTHO05D020048 4.0e-26 120.6 56 100.0
BolC2t12355H Brassica oleracea HOM05D000018 ORTHO05D020048 4.0e-26 120.6 56 100.0
A02p42890 Brassica napus HOM05D000018 ORTHO05D001920 3.4e-25 117.5 56 96.4
BraA02t09211Z Brassica rapa HOM05D000018 ORTHO05D001920 3.4e-25 117.5 56 96.4
BraA02t09210Z Brassica rapa HOM05D000018 ORTHO05D001920 2.2e-24 114.8 56 92.9
BcaC03g18214 Brassica carinata HOM05D000018 ORTHO05D001920 2.8e-24 114.4 56 92.9
BolC2t12354H Brassica oleracea HOM05D000018 ORTHO05D001920 2.8e-24 114.4 56 92.9
A02p42880 Brassica napus HOM05D000018 ORTHO05D001920 6.3e-24 113.2 56 89.3
C02p62820 Brassica napus HOM05D000018 ORTHO05D001920 8.3e-24 112.8 56 91.1
BcaB07g29695 Brassica carinata HOM05D000018 ORTHO05D001920 2.4e-23 111.3 56 89.3
Thhalv10029534m.g Eutrema salsugineum HOM05D000018 ORTHO05D001920 5.6e-20 100.1 58 79.3
Sp2g26680 Schrenkiella parvula HOM05D000018 ORTHO05D001920 7.3e-20 99.8 58 77.6
Thhalv10005710m.g Eutrema salsugineum HOM05D000018 ORTHO05D001920 1.5e-17 92.0 58 72.4
Carub.0008s2435 Capsella rubella HOM05D000018 ORTHO05D001920 9.2e-15 82.8 58 63.8
BcaB04g19929 Brassica carinata HOM05D000018 ORTHO05D001920 4.6e-14 80.5 58 60.3
BcaB02g09748 Brassica carinata HOM05D000018 ORTHO05D001920 1.7e-13 78.6 58 63.8
AT5G63590 Arabidopsis thaliana HOM05D000018 ORTHO05D001920 3.0e-13 77.8 58 60.3
A06p30210 Brassica napus HOM05D000018 ORTHO05D001920 3.9e-13 77.4 58 58.6
BolC3t18538H Brassica oleracea HOM05D000018 ORTHO05D001920 3.9e-13 77.4 58 58.6
AL8G40670 Arabidopsis lyrata HOM05D000018 ORTHO05D079664 5.0e-13 77.0 58 58.6
BcaC01g02614 Brassica carinata HOM05D000018 ORTHO05D001920 5.0e-13 77.0 58 56.9
C03p62830 Brassica napus HOM05D000018 ORTHO05D001920 5.0e-13 77.0 58 56.9
BraA06t25972Z Brassica rapa HOM05D000018 ORTHO05D001920 3.3e-12 74.3 58 56.9
A10p28100 Brassica napus HOM05D000018 ORTHO05D001920 9.5e-12 72.8 57 52.6
C09p68300 Brassica napus HOM05D000018 ORTHO05D001920 9.5e-12 72.8 57 52.6
BraA10t44859Z Brassica rapa HOM05D000018 ORTHO05D001920 9.5e-12 72.8 57 52.6
Thhalv10014054m.g Eutrema salsugineum HOM05D000018 ORTHO05D001920 1.6e-11 72.0 57 52.6
Sp6g34220 Schrenkiella parvula HOM05D000018 ORTHO05D001920 1.6e-11 72.0 57 54.4
BcaB08g37235 Brassica carinata HOM05D000018 ORTHO05D001920 3.6e-11 70.9 57 50.9
BolC9t59578H Brassica oleracea HOM05D000018 ORTHO05D001920 3.6e-11 70.9 57 50.9
AL6G19370 Arabidopsis lyrata HOM05D000018 ORTHO05D001920 4.7e-11 70.5 57 52.6
AT5G08640 Arabidopsis thaliana HOM05D000018 ORTHO05D001920 4.7e-11 70.5 57 52.6
THA.LOC104819356 Tarenaya hassleriana HOM05D000018 ORTHO05D001920 4.7e-11 70.5 57 54.4
Carub.0006s0763 Capsella rubella HOM05D000018 ORTHO05D001920 6.2e-11 70.1 57 50.9
CARHR204340 Cardamine hirsuta HOM05D000018 ORTHO05D001920 6.2e-11 70.1 57 52.6
Aa31LG3G17900 Aethionema arabicum HOM05D000018 ORTHO05D001920 1.1e-10 69.3 57 50.9
Carub.0008s2433 Capsella rubella HOM05D000018 ORTHO05D001920 3.1e-10 67.8 53 54.7
PGR102G0189 Punica granatum HOM05D000018 ORTHO05D001920 9.8e-09 62.8 53 54.7
BcaB01g00837 Brassica carinata HOM05D000018 ORTHO05D001920 1.3e-08 62.4 52 48.1
Hund16839 Selenicereus undatus HOM05D000018 ORTHO05D001920 1.3e-08 62.4 49 55.1
TWI79G0680 Tripterygium wilfordii HOM05D000018 ORTHO05D001920 1.3e-08 62.4 53 52.8
Prupe.1G502800 Prunus persica HOM05D000018 ORTHO05D001920 2.9e-08 61.2 49 53.1
BcaB02g09749 Brassica carinata HOM05D000018 ORTHO05D001920 3.7e-08 60.8 56 44.6
Duzib235G0221 Durio zibethinus HOM05D000018 ORTHO05D001920 3.7e-08 60.8 55 47.3
Os02g0767300 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D001920 4.9e-08 60.5 53 50.9
Carub.0008s2431 Capsella rubella HOM05D000018 ORTHO05D001920 8.3e-08 59.7 57 43.9
AUR62014672 Chenopodium quinoa HOM05D000018 ORTHO05D001920 8.3e-08 59.7 47 55.3
Sc26g0000350 Simmondsia chinensis HOM05D000018 ORTHO05D001920 8.3e-08 59.7 49 55.1
Ciclev10026028m.g Citrus clementina HOM05D000018 ORTHO05D001920 1.1e-07 59.3 49 53.1
PGR042G2903 Punica granatum HOM05D000018 ORTHO05D001920 1.1e-07 59.3 49 53.1
Sc23g0000810 Simmondsia chinensis HOM05D000018 ORTHO05D001920 1.1e-07 59.3 49 57.1
Atru.chr4.1168 Acer truncatum HOM05D000018 ORTHO05D001920 1.4e-07 58.9 53 47.2
BcaC07g39307 Brassica carinata HOM05D000018 ORTHO05D001920 1.4e-07 58.9 52 48.1
C08p23200 Brassica napus HOM05D000018 ORTHO05D001920 1.4e-07 58.9 52 48.1
Sp2g26670 Schrenkiella parvula HOM05D000018 ORTHO05D001920 1.4e-07 58.9 57 43.9
Haze_25414 Corylus avellana HOM05D000018 ORTHO05D001920 1.9e-07 58.5 49 51.0
MD15G1354100 Malus domestica HOM05D000018 ORTHO05D001920 1.9e-07 58.5 49 53.1
Nitab4.5_0006276g0010 Nicotiana tabacum HOM05D000018 ORTHO05D001920 1.9e-07 58.5 49 51.0
SHI11419 Sapria himalayana HOM05D000018 ORTHO05D001920 1.9e-07 58.5 52 50.0
Solyc11g013110.2 Solanum lycopersicum HOM05D000018 ORTHO05D001920 1.9e-07 58.5 49 49.0
Sopen11g008170 Solanum pennellii HOM05D000018 ORTHO05D001920 1.9e-07 58.5 49 49.0
PGSC0003DMG400014093 Solanum tuberosum HOM05D000018 ORTHO05D001920 1.9e-07 58.5 49 49.0
Aqoxy6G00157 Aquilegia oxysepala HOM05D000018 ORTHO05D001920 2.4e-07 58.2 49 51.0
MBI06_g02572_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D001920 2.4e-07 58.2 49 51.0
arahy.Tifrunner.gnm1.ann1.4WXU8P Arachis hypogaea HOM05D000018 ORTHO05D001920 3.2e-07 57.8 48 52.1
CAN.G363.27 Capsicum annuum HOM05D000018 ORTHO05D001920 3.2e-07 57.8 49 51.0
Thhalv10028827m.g Eutrema salsugineum HOM05D000018 ORTHO05D001920 3.2e-07 57.8 56 46.4
Nitab4.5_0005357g0020 Nicotiana tabacum HOM05D000018 ORTHO05D001920 3.2e-07 57.8 49 51.0
Lj1g0017149 Lotus japonicus HOM05D000018 ORTHO05D001920 4.1e-07 57.4 48 52.1
PSO528G0273 Papaver somniferum HOM05D000018 ORTHO05D001920 4.1e-07 57.4 49 49.0
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 4.1e-07 57.4 49 51.0
BraA06t25028Z Brassica rapa HOM05D000018 ORTHO05D001920 5.4e-07 57.0 52 46.2
CANSAT21G1139 Cannabis sativa HOM05D000018 ORTHO05D001920 5.4e-07 57.0 49 46.9
CiPaw.04G179300 Carya illinoinensis HOM05D000018 ORTHO05D001920 5.4e-07 57.0 53 47.2
Thhalv10004662m.g Eutrema salsugineum HOM05D000018 ORTHO05D001920 5.4e-07 57.0 53 47.2
Oeu047932.1 Olea europaea HOM05D000018 ORTHO05D001920 5.4e-07 57.0 49 49.0
PSO528G0035 Papaver somniferum HOM05D000018 ORTHO05D001920 5.4e-07 57.0 49 51.0
Peaxi162Scf00927g00035 Petunia axillaris HOM05D000018 ORTHO05D001920 5.4e-07 57.0 49 49.0
Prupe.1G502700 Prunus persica HOM05D000018 ORTHO05D001920 5.4e-07 57.0 49 53.1
RcHm_v2.0_Chr6g0295121 Rosa chinensis HOM05D000018 ORTHO05D001920 5.4e-07 57.0 50 50.0
SGA_v2.0_scaffold52G18990 Striga asiatica HOM05D000018 ORTHO05D001920 5.4e-07 57.0 48 47.9
arahy.Tifrunner.gnm1.ann1.4Y1607 Arachis hypogaea HOM05D000018 ORTHO05D001920 7.0e-07 56.6 47 53.2
A06p19490 Brassica napus HOM05D000018 ORTHO05D001920 7.0e-07 56.6 52 44.2
Carub.0004s1914 Capsella rubella HOM05D000018 ORTHO05D001920 7.0e-07 56.6 54 48.1
Ca_26924_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001920 7.0e-07 56.6 48 50.0
PSO170G1810 Papaver somniferum HOM05D000018 ORTHO05D001920 7.0e-07 56.6 49 46.9
A06p30200 Brassica napus HOM05D000018 ORTHO05D001920 9.2e-07 56.2 57 43.9
BraA06t25971Z Brassica rapa HOM05D000018 ORTHO05D001920 9.2e-07 56.2 57 43.9
Cfa002230 Carpinus fangiana HOM05D000018 ORTHO05D001920 9.2e-07 56.2 49 46.9
AUR62004717 Chenopodium quinoa HOM05D000018 ORTHO05D001920 9.2e-07 56.2 49 49.0
Gohir.D04G021900 Gossypium hirsutum HOM05D000018 ORTHO05D001920 9.2e-07 56.2 53 47.2
Gorai.012G026200 Gossypium raimondii HOM05D000018 ORTHO05D001920 9.2e-07 56.2 53 47.2
MD08G1168600 Malus domestica HOM05D000018 ORTHO05D001920 9.2e-07 56.2 49 53.1
EL10Ac1g00014 Beta vulgaris HOM05D000018 ORTHO05D001920 1.2e-06 55.8 49 49.0
Glyma.06G110600 Glycine max HOM05D000018 ORTHO05D001920 1.2e-06 55.8 48 50.0
Gohir.A05G393300 Gossypium hirsutum HOM05D000018 ORTHO05D001920 1.2e-06 55.8 53 47.2
Oeu030045.1 Olea europaea HOM05D000018 ORTHO05D001920 1.2e-06 55.8 49 46.9
Potri.004G139700 Populus trichocarpa HOM05D000018 ORTHO05D001920 1.2e-06 55.8 49 51.0
SHI11421 Sapria himalayana HOM05D000018 ORTHO05D001920 1.2e-06 55.8 51 47.1
AL8G40660 Arabidopsis lyrata HOM05D000018 ORTHO05D001920 1.6e-06 55.5 57 43.9
FAN15G2198 Fragaria x ananassa HOM05D000018 ORTHO05D001920 1.6e-06 55.5 50 50.0
FAN20G0501 Fragaria x ananassa HOM05D000018 ORTHO05D001920 1.6e-06 55.5 50 50.0
CAN.G734.3 Capsicum annuum HOM05D000018 ORTHO05D001920 2.1e-06 55.1 49 46.9
Migut.C01158 Erythranthe guttata HOM05D000018 ORTHO05D001920 2.1e-06 55.1 48 47.9
FAN27G2689 Fragaria x ananassa HOM05D000018 ORTHO05D001920 2.1e-06 55.1 50 50.0
Lj1g0022037 Lotus japonicus HOM05D000018 ORTHO05D001920 2.1e-06 55.1 53 47.2
Thecc.05G189500 Theobroma cacao HOM05D000018 ORTHO05D001920 2.1e-06 55.1 53 45.3
Actinidia29444 Actinidia chinensis HOM05D000018 ORTHO05D001920 2.7e-06 54.7 48 54.2
AL8G16190 Arabidopsis lyrata HOM05D000018 ORTHO05D001920 2.7e-06 54.7 57 47.4
CiPaw.05G225800 Carya illinoinensis HOM05D000018 ORTHO05D001920 2.7e-06 54.7 53 49.1
AUR62023632 Chenopodium quinoa HOM05D000018 ORTHO05D001920 2.7e-06 54.7 49 49.0
DCAR_017388 Daucus carota HOM05D000018 ORTHO05D001920 2.7e-06 54.7 49 46.9
Gohir.D04G021800 Gossypium hirsutum HOM05D000018 ORTHO05D001920 2.7e-06 54.7 53 45.3
Gorai.012G026100 Gossypium raimondii HOM05D000018 ORTHO05D001920 2.7e-06 54.7 53 45.3
QL10p039200 Quercus lobata HOM05D000018 ORTHO05D001920 2.7e-06 54.7 53 45.3
QL93p0116_0009 Quercus lobata HOM05D000018 ORTHO05D001920 2.7e-06 54.7 53 45.3
EL10Ac8g19969 Beta vulgaris HOM05D000018 ORTHO05D001920 3.5e-06 54.3 50 46.0
CiPaw.03G254100 Carya illinoinensis HOM05D000018 ORTHO05D001920 3.5e-06 54.3 53 45.3
CiPaw.05G226200 Carya illinoinensis HOM05D000018 ORTHO05D001920 3.5e-06 54.3 53 47.2
Ca_15211_v3 Cicer arietinum L. HOM05D000018 ORTHO05D001920 3.5e-06 54.3 48 50.0
Nn5g28145 Nelumbo nucifera HOM05D000018 ORTHO05D001920 3.5e-06 54.3 49 46.9
PSO170G0138 Papaver somniferum HOM05D000018 ORTHO05D001920 3.5e-06 54.3 49 46.9
Potri.004G139600 Populus trichocarpa HOM05D000018 ORTHO05D001920 3.5e-06 54.3 49 49.0
unitig_27.g24907 Utricularia gibba HOM05D000018 ORTHO05D001920 3.5e-06 54.3 49 49.0
vmacro00811 Vaccinium macrocarpon HOM05D000018 ORTHO05D001920 3.5e-06 54.3 48 47.9
Carub.0008s0464 Capsella rubella HOM05D000018 ORTHO05D001920 4.6e-06 53.9 57 45.6
Carub.0008s2434 Capsella rubella HOM05D000018 ORTHO05D001920 4.6e-06 53.9 56 42.9
Thhalv10004668m.g Eutrema salsugineum HOM05D000018 ORTHO05D001920 4.6e-06 53.9 56 42.9
HanXRQChr09g0258321 Helianthus annuus HOM05D000018 ORTHO05D001920 4.6e-06 53.9 49 46.9
Lalb_Chr11g0065771 Lupinus albus HOM05D000018 ORTHO05D001920 4.6e-06 53.9 48 47.9
PGR042G2782 Punica granatum HOM05D000018 ORTHO05D001920 4.6e-06 53.9 53 47.2
Sp5g16270 Schrenkiella parvula HOM05D000018 ORTHO05D001920 4.6e-06 53.9 53 45.3
Aqoxy6G00158 Aquilegia oxysepala HOM05D000018 ORTHO05D001920 6.0e-06 53.5 49 44.9
BcaB02g09746 Brassica carinata HOM05D000018 ORTHO05D001920 6.0e-06 53.5 56 41.1
CSS0045924 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D001920 6.0e-06 53.5 49 53.1
Carub.0008s0462 Capsella rubella HOM05D000018 ORTHO05D001920 6.0e-06 53.5 53 52.8
Cpa.g.sc37.77 Carica papaya HOM05D000018 ORTHO05D001920 6.0e-06 53.5 51 43.1
FvH4_2g26440 Fragaria vesca HOM05D000018 ORTHO05D001920 6.0e-06 53.5 50 48.0
Lj4A606G38 Lonicera japonica HOM05D000018 ORTHO05D001920 6.0e-06 53.5 47 48.9
Medtr3g072820 Medicago truncatula HOM05D000018 ORTHO05D001920 6.0e-06 53.5 48 50.0
Sp2g26690 Schrenkiella parvula HOM05D000018 ORTHO05D001920 6.0e-06 53.5 56 44.6
Sed0000032 Sechium edule HOM05D000018 ORTHO05D001920 6.0e-06 53.5 49 51.0
TPR.G8503 Trifolium pratense HOM05D000018 ORTHO05D001920 6.0e-06 53.5 48 47.9
TAR628G0249 Trochodendron aralioides HOM05D000018 ORTHO05D001920 6.0e-06 53.5 49 49.0
BcaC01g02613 Brassica carinata HOM05D000018 ORTHO05D001920 7.8e-06 53.1 57 40.4
C03p62840 Brassica napus HOM05D000018 ORTHO05D001920 7.8e-06 53.1 57 40.4
BolC3t18539H Brassica oleracea HOM05D000018 ORTHO05D001920 7.8e-06 53.1 57 40.4
Lsat_1_v5_gn_8_117441 Lactuca sativa HOM05D000018 ORTHO05D001920 7.8e-06 53.1 49 44.9
MBI03_g05980_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D001920 7.8e-06 53.1 49 46.9
MBI03_g26566_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D001920 7.8e-06 53.1 49 46.9
Phvul.008G166000 Phaseolus vulgaris HOM05D000018 ORTHO05D001920 7.8e-06 53.1 49 46.9


User provided reference genes

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