Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 2.4e-33 144.8 69 100.0
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 1.3e-31 139.0 68 94.1
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 6.6e-31 136.7 68 91.2
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 6.6e-31 136.7 68 92.6
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 1.5e-30 135.6 68 91.2
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 3.3e-30 134.4 68 88.2
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 1.6e-29 132.1 68 86.8
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 1.8e-28 128.6 68 85.3
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 5.8e-27 123.6 68 82.4
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 1.7e-26 122.1 68 79.4
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 1.2e-24 115.9 68 77.9
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.3e-23 112.5 68 76.5
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.4e-20 102.4 68 75.0
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 1.5e-19 99.0 68 69.1
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 6.4e-18 93.6 68 66.2
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 3.5e-16 87.8 68 60.3
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 1.0e-15 86.3 92 52.2
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 1.3e-15 85.9 79 57.0
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 1.7e-15 85.5 79 57.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 3.9e-15 84.3 92 51.1
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.5e-14 82.4 83 50.6
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 1.9e-14 82.0 89 50.6
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 2.5e-14 81.6 89 49.4
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 2.5e-14 81.6 82 50.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 2.5e-14 81.6 82 50.0
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 2.5e-14 81.6 84 48.8
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 2.5e-14 81.6 83 50.6
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 5.6e-14 80.5 89 48.3
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 5.6e-14 80.5 89 48.3
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 7.3e-14 80.1 83 50.6
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 9.6e-14 79.7 87 48.3
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 1.3e-13 79.3 89 47.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.3e-13 79.3 74 55.4
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 1.3e-13 79.3 86 50.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 1.3e-13 79.3 89 49.4
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 2.1e-13 78.6 89 47.2
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 2.1e-13 78.6 88 46.6
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 2.1e-13 78.6 86 47.7
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 2.8e-13 78.2 89 47.2
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.6e-13 77.8 89 47.2
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 3.6e-13 77.8 67 53.7
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 3.6e-13 77.8 89 47.2
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 3.6e-13 77.8 86 47.7
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 3.6e-13 77.8 89 47.2
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 3.6e-13 77.8 86 48.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 4.8e-13 77.4 78 50.0
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 4.8e-13 77.4 89 47.2
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 6.2e-13 77.0 87 46.0
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 6.2e-13 77.0 89 47.2
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.2e-13 77.0 88 50.0
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 6.2e-13 77.0 87 48.3
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 6.2e-13 77.0 89 46.1
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 8.1e-13 76.6 89 49.4
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 8.1e-13 76.6 89 49.4
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 8.1e-13 76.6 89 44.9
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 1.1e-12 76.3 37 97.3
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.4e-12 75.9 73 56.2
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 1.4e-12 75.9 89 47.2
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 2.4e-12 75.1 87 48.3
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 3.1e-12 74.7 89 49.4
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 4.0e-12 74.3 87 44.8
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 5.3e-12 73.9 88 44.3
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 6.9e-12 73.6 86 44.2
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 9.0e-12 73.2 87 43.7
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 9.0e-12 73.2 88 44.3
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 9.0e-12 73.2 88 44.3
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 1.2e-11 72.8 83 47.0
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 1.5e-11 72.4 87 47.1
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 3.4e-11 71.2 82 47.6
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 4.5e-11 70.9 88 38.6
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 4.5e-11 70.9 65 52.3
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 5.8e-11 70.5 77 49.4
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-11 70.5 89 41.6
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 7.6e-11 70.1 87 42.5
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 9.9e-11 69.7 89 42.7
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 9.9e-11 69.7 88 44.3
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.3e-10 69.3 85 43.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.3e-10 69.3 69 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.7e-10 68.9 41 63.4
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 1.7e-10 68.9 82 41.5
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 2.9e-10 68.2 83 45.8
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 6.4e-10 67.0 84 38.1
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 6.4e-10 67.0 83 44.6
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.4e-10 67.0 87 41.4
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.4e-10 67.0 87 41.4
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.1e-09 66.2 41 65.9
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.4e-09 65.9 87 37.9
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 1.4e-09 65.9 80 41.2
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 1.9e-09 65.5 87 44.8
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.2e-09 64.3 86 39.5
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 5.4e-09 63.9 41 65.9
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 7.1e-09 63.5 41 65.9
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 2.1e-08 62.0 41 63.4
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 2.1e-08 62.0 37 75.7
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 4.6e-08 60.8 41 65.9
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.9e-06 55.5 39 56.4


User provided reference genes

Program Settings