Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 5.9e-183 644.4 416 98.6
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 5.9e-183 644.4 416 100.0
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 2.2e-182 642.5 416 99.8
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 3.2e-181 638.6 420 97.6
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 4.7e-180 634.8 420 98.6
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.9e-173 612.8 417 92.6
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.1e-165 587.0 417 83.2
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.1e-165 587.0 417 83.2
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 3.6e-164 582.0 413 86.4
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 6.1e-164 581.3 421 83.4
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 8.0e-164 580.9 413 83.1
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 4.4e-162 575.1 417 82.3
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 4.4e-162 575.1 417 82.3
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 3.5e-159 565.5 412 87.1
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.3e-158 563.5 407 88.0
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 2.9e-158 562.4 416 81.7
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 2.9e-158 562.4 410 90.7
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 3.0e-155 552.4 418 89.5
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 5.0e-150 535.0 422 79.6
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 6.0e-135 485.0 421 77.9
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 4.4e-130 468.8 390 73.1
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.0e-126 457.6 406 71.9
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 2.5e-125 453.0 408 60.5
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 2.5e-125 453.0 402 69.7
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.3e-125 452.6 405 74.3
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 3.3e-125 452.6 406 71.7
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 5.6e-125 451.8 406 64.3
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 5.6e-125 451.8 408 71.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 9.5e-125 451.1 406 69.5
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 9.5e-125 451.1 403 67.5
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 1.6e-124 450.3 406 76.8
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 1.6e-124 450.3 402 70.6
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 3.6e-124 449.1 395 70.9
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 4.7e-124 448.7 398 59.8
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 6.2e-124 448.4 404 68.3
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 6.2e-124 448.4 422 71.8
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 8.1e-124 448.0 404 72.3
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.4e-123 447.2 389 70.4
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.8e-123 446.8 397 70.3
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.8e-123 446.8 409 73.8
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 2.3e-123 446.4 399 63.4
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.3e-123 446.4 414 72.9
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 3.1e-123 446.0 402 74.4
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 3.1e-123 446.0 401 64.6
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 5.2e-123 445.3 397 60.2
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 5.2e-123 445.3 404 59.7
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 6.8e-123 444.9 404 59.7
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 8.9e-123 444.5 399 68.7
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 8.9e-123 444.5 404 66.3
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.2e-122 444.1 420 71.0
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 2.6e-122 443.0 398 70.9
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 7.6e-122 441.4 413 71.7
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.7e-121 440.3 398 63.1
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 3.8e-121 439.1 397 71.8
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 4.9e-121 438.7 413 69.2
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 6.4e-121 438.3 414 61.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 8.4e-121 438.0 414 73.9
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 8.4e-121 438.0 401 69.3
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.1e-120 437.6 403 69.2
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.4e-120 437.2 409 64.3
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.4e-120 437.2 429 55.2
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 3.2e-120 436.0 418 71.3
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.1e-120 435.6 395 70.9
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 5.4e-120 435.3 417 64.5
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 7.1e-120 434.9 405 72.6
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 7.1e-120 434.9 406 71.2
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 9.2e-120 434.5 423 73.8
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 3.5e-119 432.6 430 60.5
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 1.7e-118 430.3 388 71.4
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 2.3e-118 429.9 394 69.8
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 6.6e-118 428.3 432 68.1
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 1.1e-117 427.6 429 63.4
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 1.5e-117 427.2 394 70.1
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.9e-117 426.8 399 56.4
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 3.3e-117 426.0 395 69.9
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.6e-117 425.2 407 65.4
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 2.8e-116 422.9 421 66.3
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 8.1e-116 421.4 348 77.0
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 1.1e-115 421.0 400 64.0
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 2.4e-115 419.9 416 59.1
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 5.8e-114 415.2 347 76.4
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 5.8e-114 415.2 438 52.7
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 4.9e-113 412.1 401 54.9
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.1e-112 411.0 401 54.9
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.4e-112 409.8 417 66.7
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 3.2e-112 409.5 416 67.1
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 7.1e-112 408.3 351 68.1
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-111 407.5 413 64.6
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.6e-111 407.1 345 69.6
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.7e-111 406.4 410 64.9
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.7e-110 403.7 363 70.8
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 6.6e-110 401.7 347 63.1
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.9e-109 400.2 417 65.7
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 2.5e-109 399.8 383 69.2
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 4.3e-109 399.1 347 68.3
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.3e-108 397.5 397 65.7
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.2e-106 391.0 358 65.4
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.2e-106 391.0 353 57.2
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 2.1e-103 380.2 395 63.5
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 2.7e-103 379.8 347 66.9
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 6.0e-103 378.6 410 61.0
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.0e-102 377.9 410 60.7
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 5.1e-102 375.6 397 55.2
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 3.3e-101 372.9 392 54.6
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 9.6e-101 371.3 313 66.8
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 4.0e-99 365.9 346 63.9
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 5.3e-99 365.5 406 60.6
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.3e-99 365.5 406 59.9
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 6.9e-99 365.2 378 54.5
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.5e-98 364.0 317 72.9
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-97 360.9 407 56.3
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 1.3e-97 360.9 353 54.4
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.9e-97 359.8 425 57.2
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 7.9e-95 351.7 361 65.7
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 3.3e-93 346.3 358 57.3
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 7.4e-93 345.1 344 64.2
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.3e-86 324.3 332 58.7
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 2.5e-85 320.1 176 84.1
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 9.0e-83 311.6 383 46.5
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 5.9e-82 308.9 160 87.5
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 5.9e-82 308.9 329 49.2
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 2.9e-81 306.6 351 48.4
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.1e-80 304.7 353 48.7
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.9e-80 303.9 353 48.4
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 8.2e-76 288.5 348 46.3
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 3.2e-72 276.6 319 46.7
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 3.2e-72 276.6 301 62.1
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.0e-62 245.0 132 84.1
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 2.6e-61 240.4 291 63.9
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 9.7e-61 238.4 285 65.6
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.1e-56 224.9 119 85.7
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 2.4e-51 207.2 301 62.8
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 4.1e-51 206.5 111 82.9
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.7e-47 193.0 113 75.2
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-44 184.9 169 54.4
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 5.5e-40 169.5 92 81.5
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 2.1e-39 167.5 337 33.5
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 1.2e-37 161.8 266 42.5
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 8.6e-33 145.6 169 51.5
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 7.8e-26 122.5 155 45.8
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.9e-24 117.9 272 30.5
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.2e-22 109.8 66 77.3
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.0e-13 81.3 39 92.3
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.4e-13 80.1 67 56.7


User provided reference genes

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