Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.2e-64 250.0 151 100.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.2e-62 241.5 151 96.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.1e-29 132.9 122 61.5
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.3e-26 123.6 120 58.3
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.7e-26 123.2 120 58.3
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 6.1e-21 104.8 122 50.8
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.9e-20 102.1 96 70.8
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 6.7e-20 101.3 122 50.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 6.7e-20 101.3 109 55.0
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.6e-19 99.4 54 87.0
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 6.3e-18 94.7 102 56.9
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.2e-18 94.4 100 56.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.4e-17 93.6 61 75.4
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.4e-17 92.8 60 70.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 4.1e-17 92.0 102 55.9
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.2e-16 90.5 100 55.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-16 90.5 102 54.9
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.6e-16 89.4 100 54.0
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.6e-16 89.4 107 47.7
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 4.5e-16 88.6 100 54.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.0e-15 87.4 149 38.9
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.0e-15 87.4 149 38.9
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.3e-15 87.0 100 53.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.9e-15 85.9 100 53.0
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.9e-15 85.9 100 53.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.9e-15 85.9 100 53.0
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.0e-15 85.1 100 51.0
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.5e-15 84.3 43 90.7
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.5e-14 83.6 100 52.0
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.5e-14 83.6 100 51.0
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.9e-14 83.2 100 51.0
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.6e-13 80.1 110 46.4
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.6e-13 80.1 42 90.5
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.7e-13 79.3 96 50.0
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 8.0e-13 77.8 40 92.5
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 8.0e-13 77.8 41 87.8
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.0e-12 77.4 100 46.0
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.4e-12 77.0 112 43.8
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.4e-12 77.0 40 87.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-12 76.6 99 47.5
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.8e-12 76.6 99 47.5
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.8e-12 76.6 40 90.0
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.8e-12 76.6 40 90.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.8e-12 76.6 100 45.0
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.3e-12 76.3 99 46.5
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.0e-12 75.5 41 87.8
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 4.0e-12 75.5 41 87.8
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 4.0e-12 75.5 53 69.8
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.0e-12 75.5 103 46.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 6.7e-12 74.7 40 87.5
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.7e-12 74.7 40 87.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.8e-12 74.3 42 83.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.0e-11 73.2 100 46.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-11 73.2 57 64.9
MELO3C030015.2 Cucumis melo HOM05D019030 ORTHO05D017703 3.3e-11 72.4 46 73.9
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.4e-11 72.0 39 84.6
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 7.5e-11 71.2 90 50.0
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.7e-10 70.1 102 45.1
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.7e-10 70.1 95 46.3
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-10 70.1 95 45.3
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-10 70.1 95 45.3
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-10 70.1 95 45.3
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.7e-10 70.1 95 45.3
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.2e-10 69.7 40 80.0
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 3.7e-10 68.9 59 66.1
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.8e-10 68.6 95 46.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.8e-10 68.6 95 46.3
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 4.8e-10 68.6 104 44.2
SEGI_01859 Sequoiadendron giganteum HOM05D003751 ORTHO05D017703 6.3e-10 68.2 60 58.3
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 8.2e-10 67.8 104 45.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-09 67.4 102 42.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.1e-09 67.4 102 45.1
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.4e-09 67.0 97 47.4
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.4e-09 67.0 100 44.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.4e-09 67.0 100 46.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.8e-09 66.6 95 46.3
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.8e-09 66.6 102 45.1
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.8e-09 66.6 92 45.7
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.4e-09 66.2 102 45.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.1e-09 65.9 38 78.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 4.1e-09 65.5 94 45.7
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 4.1e-09 65.5 102 44.1
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.1e-09 65.5 93 43.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.1e-09 65.5 95 46.3
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.3e-09 65.1 101 42.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 5.3e-09 65.1 100 41.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 5.3e-09 65.1 90 46.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.0e-09 64.7 34 88.2
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 7.0e-09 64.7 102 41.2
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 7.0e-09 64.7 101 43.6
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.0e-09 64.7 34 88.2
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.0e-09 64.7 34 88.2
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.1e-09 64.3 35 82.9
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 9.1e-09 64.3 98 45.9
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 9.1e-09 64.3 93 47.3
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 9.1e-09 64.3 93 43.0
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 9.1e-09 64.3 102 42.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.2e-08 63.9 99 41.4
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.2e-08 63.9 102 43.1
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.6e-08 63.5 98 42.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.6e-08 63.5 98 42.9
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.6e-08 63.5 95 45.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.6e-08 63.5 84 47.6
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.6e-08 63.5 54 63.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.6e-08 63.5 81 49.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.6e-08 63.5 81 49.4
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.0e-08 63.2 93 45.2
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.0e-08 63.2 34 88.2
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.7e-08 62.8 103 44.7
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.7e-08 62.8 94 44.7
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.7e-08 62.8 34 85.3
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.7e-08 62.8 34 85.3
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.7e-08 62.8 95 43.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.5e-08 62.4 34 88.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 3.5e-08 62.4 97 43.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.5e-08 62.4 102 42.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.5e-08 62.4 61 54.1
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 4.5e-08 62.0 97 44.3
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 4.5e-08 62.0 97 44.3
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.5e-08 62.0 34 85.3
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.5e-08 62.0 34 85.3
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.5e-08 62.0 102 41.2
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 5.9e-08 61.6 34 88.2
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.9e-08 61.6 34 85.3
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 7.7e-08 61.2 35 82.9
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 7.7e-08 61.2 93 44.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 7.7e-08 61.2 95 43.2
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.0e-07 60.8 102 44.1
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.0e-07 60.8 35 82.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.0e-07 60.8 35 82.9
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.3e-07 60.5 85 45.9
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.3e-07 60.5 32 90.6
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.3e-07 60.5 93 44.1
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.3e-07 60.5 97 44.3
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.3e-07 60.5 94 45.7
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.3e-07 60.5 85 45.9
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-07 60.1 33 84.8
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.2e-07 59.7 33 84.8
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.2e-07 59.7 33 84.8
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.2e-07 59.7 33 84.8
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.2e-07 59.7 93 44.1
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.9e-07 59.3 32 87.5
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.9e-07 59.3 35 80.0
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.9e-07 59.3 95 44.2
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 3.8e-07 58.9 95 42.1
A02p41530 Brassica napus HOM05D003751 ORTHO05D100660 5.0e-07 58.5 156 32.7
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.0e-07 58.5 32 84.4
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.0e-07 58.5 32 84.4
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 6.5e-07 58.2 104 41.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 6.5e-07 58.2 104 41.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.5e-07 57.8 41 65.9
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.1e-06 57.4 107 38.3
Oeu027875.1 Olea europaea HOM05D003751 ORTHO05D004765 1.5e-06 57.0 28 85.7
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.5e-06 57.0 33 81.8
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.5e-06 57.0 33 81.8
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.5e-06 57.0 33 81.8
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.2e-06 55.8 54 57.4
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 5.5e-06 55.1 42 64.3
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.5e-06 55.1 97 38.1
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.2e-06 54.7 29 82.8
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 9.4e-06 54.3 81 42.0


User provided reference genes

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