Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 7.6e-112 407.1 199 100.0
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 7.6e-112 407.1 199 100.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.2e-109 399.8 199 98.5
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 7.3e-107 390.6 199 95.5
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.2e-106 389.8 199 95.5
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 2.0e-104 382.5 195 93.8
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.4e-97 359.8 199 87.9
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 2.1e-93 345.9 195 85.6
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 4.5e-88 328.2 195 82.6
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.2e-87 325.9 198 81.8
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 4.2e-86 321.6 197 81.2
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 5.1e-84 314.7 199 77.4
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.7e-84 314.3 198 78.8
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 4.3e-83 311.6 194 78.9
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 5.8e-80 301.2 199 74.4
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.0e-76 290.4 196 74.5
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.3e-76 289.3 194 73.7
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.7e-76 287.3 194 73.2
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 8.7e-76 287.3 194 73.2
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 3.3e-75 285.4 193 72.5
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 2.1e-74 282.7 196 71.9
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 6.3e-74 281.2 192 72.9
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.8e-73 279.6 197 69.5
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.8e-73 279.6 195 71.8
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 9.0e-73 277.3 196 70.9
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.0e-71 273.9 196 69.9
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 8.5e-71 270.8 197 69.5
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.4e-70 270.0 193 69.9
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.9e-70 269.6 187 70.6
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 4.2e-70 268.5 199 67.3
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 4.2e-70 268.5 198 68.7
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 4.2e-70 268.5 194 68.0
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.5e-70 268.1 193 68.9
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 9.3e-70 267.3 194 67.0
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.2e-69 266.9 193 68.4
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.2e-69 266.9 192 69.8
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.6e-69 266.5 190 67.9
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 6.1e-69 264.6 193 68.4
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 6.1e-69 264.6 191 69.1
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.3e-68 263.5 191 69.6
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.8e-68 263.1 198 66.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 2.3e-68 262.7 196 64.3
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.3e-68 262.7 195 68.2
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 2.3e-68 262.7 195 68.2
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.9e-68 261.9 191 68.6
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 6.7e-68 261.2 189 69.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 8.7e-68 260.8 193 66.3
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.1e-67 260.4 198 64.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.1e-67 260.4 194 66.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.9e-67 259.6 188 68.6
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.9e-67 259.6 197 64.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.5e-67 259.2 194 66.5
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.3e-67 258.8 191 68.1
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 3.3e-67 258.8 191 67.5
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 4.3e-67 258.5 189 66.7
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.3e-67 258.5 190 66.3
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 4.3e-67 258.5 195 66.7
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 4.3e-67 258.5 197 64.0
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.3e-66 256.9 182 72.0
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.3e-66 256.9 179 70.4
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 2.8e-66 255.8 185 68.1
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 3.7e-66 255.4 192 66.7
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 6.3e-66 254.6 194 66.0
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.4e-65 253.4 197 64.0
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.8e-65 253.1 191 65.4
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.4e-65 252.7 189 67.7
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 3.1e-65 252.3 191 66.0
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.2e-64 250.4 194 64.4
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.5e-64 250.0 191 64.9
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.0e-64 249.6 193 64.8
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 3.4e-64 248.8 179 67.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.0e-63 247.3 190 63.7
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.2e-63 246.1 198 63.6
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.2e-63 246.1 191 63.4
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.9e-63 245.7 199 62.3
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.1e-62 243.8 192 62.0
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.1e-62 243.8 176 69.9
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.4e-62 243.4 167 71.3
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 5.5e-62 241.5 167 70.7
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.6e-61 238.8 169 71.0
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.6e-61 238.8 188 63.8
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.0e-60 237.3 199 60.8
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 4.4e-59 231.9 193 63.2
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 5.9e-56 221.5 175 61.7
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.9e-55 219.2 195 56.9
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 3.2e-54 215.7 185 58.4
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.7e-52 208.0 191 53.9
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.3e-50 203.8 189 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.1e-49 198.7 193 53.4
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.6e-48 196.1 149 65.8
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 7.7e-48 194.5 196 55.1
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 9.4e-46 187.6 191 52.4
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.8e-44 183.3 189 49.7
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.4e-41 173.7 198 47.5
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.3e-41 171.8 165 56.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 7.0e-33 144.8 78 84.6
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 7.0e-33 144.8 78 84.6
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 2.7e-32 142.9 93 75.3
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.0e-31 141.0 72 90.3
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 3.8e-31 139.0 101 66.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 3.0e-28 129.4 109 63.3
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.6e-27 126.3 77 77.9
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 2.6e-27 126.3 112 56.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 9.2e-25 117.9 81 70.4
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 6.4e-18 95.1 117 44.4
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.4e-18 95.1 94 52.1
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.2e-16 90.9 162 40.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 9.8e-11 71.2 167 32.3
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 3.7e-10 69.3 170 28.2
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.3e-10 68.2 171 28.7
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.1e-09 67.8 171 28.7
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 2.4e-09 66.6 180 27.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.1e-09 65.9 178 28.1
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 7.0e-09 65.1 170 28.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 7.0e-09 65.1 166 28.9
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.2e-08 64.3 171 28.1
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.6e-08 63.9 171 27.5
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.0e-08 63.5 174 28.2
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.0e-08 63.5 174 25.9
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.0e-08 63.5 198 27.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.5e-08 62.8 188 26.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 7.8e-08 61.6 174 28.2
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.0e-07 61.2 174 27.0
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.3e-07 60.8 185 27.0
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.3e-07 60.1 173 24.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 3.0e-07 59.7 174 27.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 3.9e-07 59.3 173 27.2
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 3.9e-07 59.3 147 26.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.0e-07 58.9 184 26.6
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.6e-07 58.5 141 34.8
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 6.6e-07 58.5 172 26.2
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.6e-07 58.5 183 27.3
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 8.6e-07 58.2 176 27.3
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 8.6e-07 58.2 176 27.3
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 8.6e-07 58.2 162 29.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 8.6e-07 58.2 169 27.2
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 8.6e-07 58.2 174 28.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.1e-06 57.8 183 26.2
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.1e-06 57.8 173 28.3
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.1e-06 57.8 179 24.6
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.1e-06 57.8 174 26.4
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.5e-06 57.4 174 28.2
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.5e-06 57.4 174 27.6
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.5e-06 57.4 174 26.4
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.9e-06 57.0 148 27.0
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.9e-06 57.0 169 27.8
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.9e-06 57.0 50 52.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.5e-06 56.6 171 26.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.5e-06 56.6 173 27.2
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.5e-06 56.6 174 27.0
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.5e-06 56.6 175 26.9
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.5e-06 56.6 176 25.6
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.3e-06 56.2 180 30.0
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.3e-06 56.2 172 27.9
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.3e-06 56.2 174 25.3
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.3e-06 55.8 174 26.4
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 5.6e-06 55.5 164 26.2
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 5.6e-06 55.5 174 27.0
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.6e-06 55.5 175 26.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.6e-06 55.5 173 25.4
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 7.3e-06 55.1 148 25.7
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 7.3e-06 55.1 184 25.5
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.3e-06 55.1 170 27.6
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 7.3e-06 55.1 189 27.0
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 9.5e-06 54.7 174 25.9


User provided reference genes

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