Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p60610 Brassica napus HOM05D016815 ORTHO05D020093 6.4e-58 227.3 119 100.0
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 2.8e-45 185.3 98 100.0
C06p15150 Brassica napus HOM05D016815 ORTHO05D020093 1.1e-38 163.3 116 75.0
BolC6t36689H Brassica oleracea HOM05D016815 ORTHO05D020093 1.1e-38 163.3 116 75.0
C03p47070 Brassica napus HOM05D016815 ORTHO05D020093 2.1e-29 132.5 115 58.3
BraA03t13842Z Brassica rapa HOM05D009238 ORTHO05D020093 1.3e-18 96.7 98 52.0
BolC9t57963H Brassica oleracea HOM05D011670 ORTHO05D020093 2.9e-18 95.5 107 46.7
BraA10t43824Z Brassica rapa HOM05D001239 ORTHO05D000925 1.5e-14 83.2 75 61.3
BcaC09g50328 Brassica carinata HOM05D000018 ORTHO05D008577 4.8e-13 78.2 105 42.9
BcaC07g39656 Brassica carinata HOM05D000722 ORTHO05D000590 6.3e-13 77.8 48 75.0
BcaC06g33612 Brassica carinata HOM05D011670 ORTHO05D031889 3.1e-12 75.5 105 43.8
BcaB06g25898 Brassica carinata HOM05D011670 ORTHO05D012489 3.4e-11 72.0 99 47.5
BcaB03g15929 Brassica carinata HOM05D000496 ORTHO05D000411 7.7e-11 70.9 80 53.8
BcaC04g21866 Brassica carinata HOM05D011670 ORTHO05D012489 1.0e-10 70.5 83 51.8
BcaB04g17452 Brassica carinata HOM05D009238 ORTHO05D019868 1.3e-10 70.1 75 57.3
BcaC09g49165 Brassica carinata HOM05D000032 ORTHO05D000925 1.3e-10 70.1 81 50.6
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-10 69.7 117 43.6
BolC6t38778H Brassica oleracea HOM05D009238 ORTHO05D012489 1.7e-10 69.7 63 61.9
BraA03t12194Z Brassica rapa HOM05D009238 ORTHO05D012489 2.9e-10 68.9 61 62.3
A10p16820 Brassica napus HOM05D016815 ORTHO05D012489 3.8e-10 68.6 82 46.3
C01p26600 Brassica napus HOM05D011670 ORTHO05D031889 3.8e-10 68.6 91 45.1
BolC4t26715H Brassica oleracea HOM05D001239 ORTHO05D011709 6.5e-10 67.8 58 58.6
BcaC07g39368 Brassica carinata HOM05D009238 ORTHO05D012489 8.5e-10 67.4 58 58.6
BolC4t26060H Brassica oleracea HOM05D009238 ORTHO05D012489 8.5e-10 67.4 114 43.0
BcaC07g36896 Brassica carinata HOM05D004566 ORTHO05D000925 2.5e-09 65.9 129 37.2
BcaC06g33741 Brassica carinata HOM05D000496 ORTHO05D000411 3.2e-09 65.5 82 45.1
BraA10t43537Z Brassica rapa HOM05D011670 ORTHO05D027274 3.2e-09 65.5 63 57.1
C04p33720 Brassica napus HOM05D031458 ORTHO05D027524 5.5e-09 64.7 84 46.4
BolC4t24940H Brassica oleracea HOM05D031458 ORTHO05D027524 5.5e-09 64.7 84 46.4
A10p14470 Brassica napus HOM05D011670 ORTHO05D027274 7.2e-09 64.3 86 50.0
BolC2t08494H Brassica oleracea HOM05D009238 ORTHO05D012489 7.2e-09 64.3 94 47.9
BolC6t35760H Brassica oleracea HOM05D023674 ORTHO05D033661 7.2e-09 64.3 36 77.8
C03p49130 Brassica napus HOM05D014076 ORTHO05D024532 9.4e-09 63.9 58 56.9
BolC2t07633H Brassica oleracea HOM05D009238 ORTHO05D019868 9.4e-09 63.9 63 60.3
BraA02t08674Z Brassica rapa HOM05D009238 ORTHO05D012489 2.1e-08 62.8 88 43.2
C01p30110 Brassica napus HOM05D001239 ORTHO05D023908 3.6e-08 62.0 49 65.3
C04p30980 Brassica napus HOM05D001035 ORTHO05D021752 3.6e-08 62.0 55 58.2
C06p11850 Brassica napus HOM05D009238 ORTHO05D012489 4.7e-08 61.6 63 55.6
C07p04310 Brassica napus HOM05D001239 ORTHO05D011709 4.7e-08 61.6 47 68.1
C08p14340 Brassica napus HOM05D001239 ORTHO05D024532 4.7e-08 61.6 46 69.6
A02p36830 Brassica napus HOM05D009238 ORTHO05D012489 6.1e-08 61.2 81 45.7
BcaC02g08196 Brassica carinata HOM05D009238 ORTHO05D011709 7.9e-08 60.8 47 70.2
C03p49160 Brassica napus HOM05D014076 ORTHO05D024532 7.9e-08 60.8 58 53.4
C04p60320 Brassica napus HOM05D011670 ORTHO05D027357 7.9e-08 60.8 86 44.2
C05p09640 Brassica napus HOM05D011670 ORTHO05D027357 7.9e-08 60.8 86 44.2
BolC1t02956H Brassica oleracea HOM05D001239 ORTHO05D023908 7.9e-08 60.8 47 66.0
BolC3t17197H Brassica oleracea HOM05D014076 ORTHO05D024532 7.9e-08 60.8 58 53.4
BcaB03g11924 Brassica carinata HOM05D001239 ORTHO05D011709 1.0e-07 60.5 54 55.6
BcaB07g30912 Brassica carinata HOM05D000496 ORTHO05D000411 1.0e-07 60.5 53 54.7
BcaC01g00485 Brassica carinata HOM05D000496 ORTHO05D000411 1.0e-07 60.5 71 46.5
BcaC01g06924 Brassica carinata HOM05D000496 ORTHO05D000411 1.0e-07 60.5 51 62.7
BcaC02g09195 Brassica carinata HOM05D001239 ORTHO05D031919 1.0e-07 60.5 74 44.6
BcaC05g25304 Brassica carinata HOM05D000508 ORTHO05D000371 1.0e-07 60.5 66 50.0
C05p11830 Brassica napus HOM05D001239 ORTHO05D033080 1.0e-07 60.5 66 50.0
BcaC01g03871 Brassica carinata HOM05D001239 ORTHO05D011709 1.4e-07 60.1 51 58.8
A04p06620 Brassica napus HOM05D009238 ORTHO05D012489 1.4e-07 60.1 76 48.7
A06p35270 Brassica napus HOM05D000591 ORTHO05D000579 1.4e-07 60.1 47 68.1
BolC2t10713H Brassica oleracea HOM05D001239 ORTHO05D011709 1.4e-07 60.1 52 59.6
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.8e-07 59.7 64 53.1
C01p34040 Brassica napus HOM05D001239 ORTHO05D011709 2.3e-07 59.3 64 48.4
C09p42620 Brassica napus HOM05D001239 ORTHO05D011709 3.0e-07 58.9 67 52.2
BcaC09g49677 Brassica carinata HOM05D000496 ORTHO05D011709 3.9e-07 58.5 97 37.1
BcaC01g01482 Brassica carinata HOM05D009238 ORTHO05D021611 5.1e-07 58.2 78 43.6
BcaC05g27311 Brassica carinata HOM05D001239 ORTHO05D011709 5.1e-07 58.2 45 64.4
BraA06t26451Z Brassica rapa HOM05D001307 ORTHO05D001158 5.1e-07 58.2 46 67.4
BcaB01g01785 Brassica carinata HOM05D000496 ORTHO05D000925 6.7e-07 57.8 53 52.8
BcaC04g22514 Brassica carinata HOM05D001239 ORTHO05D027739 6.7e-07 57.8 75 48.0
BraA09t38239Z Brassica rapa HOM05D014076 ORTHO05D021903 8.8e-07 57.4 55 54.5
CARHR154060 Cardamine hirsuta HOM05D001239 ORTHO05D011709 8.8e-07 57.4 71 43.7
A01p18960 Brassica napus HOM05D014076 ORTHO05D021903 1.1e-06 57.0 54 59.3
C07p03520 Brassica napus HOM05D001239 ORTHO05D027739 1.1e-06 57.0 75 46.7
BolC2t08478H Brassica oleracea HOM05D001239 ORTHO05D024427 1.1e-06 57.0 52 51.9
BraA01t01837Z Brassica rapa HOM05D014076 ORTHO05D021903 1.1e-06 57.0 54 59.3
BraA09t38523Z Brassica rapa HOM05D027742 ORTHO05D027054 1.1e-06 57.0 53 56.6
BolC5t29932H Brassica oleracea HOM05D001239 ORTHO05D033080 1.5e-06 56.6 61 50.8
BcaC01g02173 Brassica carinata HOM05D001239 ORTHO05D017499 2.0e-06 56.2 51 54.9
C03p67910 Brassica napus HOM05D001239 ORTHO05D017499 2.0e-06 56.2 51 54.9
BolC1t05632H Brassica oleracea HOM05D014076 ORTHO05D021903 2.0e-06 56.2 56 53.6
C05p15940 Brassica napus HOM05D009238 ORTHO05D021611 2.6e-06 55.8 70 45.7
BolC1t03373H Brassica oleracea HOM05D001239 ORTHO05D011709 2.6e-06 55.8 61 47.5
BraA04t16367Z Brassica rapa HOM05D009238 ORTHO05D012489 2.6e-06 55.8 68 51.5
BolC5t30244H Brassica oleracea HOM05D001239 ORTHO05D011709 3.3e-06 55.5 94 42.6
BraA04t17766Z Brassica rapa HOM05D001239 ORTHO05D024427 3.3e-06 55.5 53 50.9
BcaC06g36045 Brassica carinata HOM05D000496 ORTHO05D000411 4.4e-06 55.1 53 50.9
BcaB03g14365 Brassica carinata HOM05D011670 ORTHO05D027274 7.4e-06 54.3 72 44.4
BcaC02g10496 Brassica carinata HOM05D011670 ORTHO05D012489 7.4e-06 54.3 51 54.9
C05p23240 Brassica napus HOM05D009238 ORTHO05D021611 7.4e-06 54.3 70 44.3
BcaC04g19167 Brassica carinata HOM05D000496 ORTHO05D000411 9.7e-06 53.9 53 50.9


User provided reference genes

Program Settings