Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 4.2e-141 505.0 317 100.0
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 5.9e-135 484.6 317 96.8
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 2.5e-133 479.2 320 95.6
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.6e-132 476.5 319 95.9
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 1.3e-110 403.7 270 98.1
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 4.8e-92 342.0 274 87.6
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 2.7e-79 299.7 307 60.6
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 3.4e-74 282.7 307 58.3
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 5.8e-74 282.0 293 61.1
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 3.7e-68 262.7 307 56.7
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 9.0e-67 258.1 311 57.2
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 4.2e-64 249.2 310 55.2
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.8e-62 243.8 305 53.1
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 4.8e-52 209.1 292 46.6
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 4.5e-26 122.9 321 34.6
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 5.2e-22 109.4 233 38.2
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 2.0e-21 107.5 232 43.1
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 3.4e-21 106.7 228 44.7
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.4e-21 106.7 223 41.3
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 5.7e-21 105.9 224 42.0
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 5.7e-21 105.9 224 42.0
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 9.8e-21 105.1 235 42.1
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 1.8e-19 100.9 198 38.4
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.4e-19 100.5 244 33.2
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 2.4e-19 100.5 236 38.6
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.1e-19 100.1 242 32.6
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.1e-19 100.1 242 32.2
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 4.1e-19 99.8 242 32.2
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 7.0e-19 99.0 227 32.2
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 9.2e-19 98.6 227 32.2
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.0e-18 97.4 229 31.9
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.0e-18 97.4 229 31.9
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.0e-18 97.4 229 31.9
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 2.0e-18 97.4 234 38.9
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 4.5e-18 96.3 202 33.7
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.5e-18 96.3 192 35.9
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 5.9e-18 95.9 288 33.3
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 5.9e-18 95.9 255 35.3
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 7.8e-18 95.5 214 44.4
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 1.0e-17 95.1 196 35.2
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.7e-17 94.4 203 43.8
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 5.0e-17 92.8 204 31.9
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 8.6e-17 92.0 231 38.5
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 8.6e-17 92.0 288 35.8
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.9e-16 90.9 191 35.1
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 3.3e-16 90.1 211 33.2
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 3.3e-16 90.1 205 46.3
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 3.3e-16 90.1 276 30.1
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 4.3e-16 89.7 234 31.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 5.6e-16 89.4 280 31.1
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 7.3e-16 89.0 234 31.6
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 9.5e-16 88.6 243 32.5
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 1.2e-15 88.2 244 31.6
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 4.7e-15 86.3 211 34.1
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 4.7e-15 86.3 224 32.6
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 4.7e-15 86.3 250 31.6
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 6.1e-15 85.9 229 38.0
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 6.1e-15 85.9 240 35.0
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 6.1e-15 85.9 235 32.8
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 6.1e-15 85.9 235 33.2
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 8.0e-15 85.5 240 35.0
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.0e-14 85.1 218 33.0
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.4e-14 84.7 213 36.2
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 3.0e-14 83.6 198 35.4
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 4.0e-14 83.2 245 31.0
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 5.2e-14 82.8 204 34.8
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 6.8e-14 82.4 211 32.2
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 6.8e-14 82.4 229 35.8
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 8.9e-14 82.0 204 34.8
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 4.4e-13 79.7 225 32.4
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 9.8e-13 78.6 248 29.8
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.3e-12 78.2 218 33.0
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.7e-12 77.8 215 33.5
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 2.9e-12 77.0 202 32.2
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.9e-12 77.0 251 30.7
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 3.7e-12 76.6 194 34.0
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 6.4e-12 75.9 222 30.6
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 6.4e-12 75.9 46 69.6
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 6.4e-12 75.9 144 38.9
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 6.4e-12 75.9 249 28.9
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 6.4e-12 75.9 249 29.3
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 8.3e-12 75.5 200 42.5
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 8.3e-12 75.5 231 32.9
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.4e-11 73.9 152 40.1
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 3.2e-11 73.6 190 33.7
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 4.1e-11 73.2 108 41.7
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 7.0e-11 72.4 92 47.8
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 7.0e-11 72.4 227 45.8
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 9.2e-11 72.0 223 30.0
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 9.2e-11 72.0 244 29.9
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 2.7e-10 70.5 189 32.3
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 4.6e-10 69.7 227 31.7
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 4.6e-10 69.7 258 27.9
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 5.9e-10 69.3 162 34.6
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 7.8e-10 68.9 258 27.9
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 7.8e-10 68.9 301 26.6
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 7.8e-10 68.9 154 33.8
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.0e-09 68.6 205 32.7
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 6.6e-09 65.9 217 29.0
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.1e-08 65.1 226 28.8
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 4.3e-08 63.2 210 37.1
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 8.0e-07 58.9 218 30.7
ECA233G0397 Erigeron canadensis HOM05D003457 ORTHO05D009249 1.1e-06 58.5 195 37.9
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 1.1e-06 58.5 254 28.0
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.8e-06 57.8 207 29.0


User provided reference genes

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