Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-108 396.7 220 100.0
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-108 396.7 220 100.0
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 2.8e-107 392.1 212 99.5
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 1.6e-94 349.7 222 90.5
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 1.7e-93 346.3 223 90.1
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 1.0e-80 303.9 217 77.0
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 3.8e-80 302.0 224 79.9
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 9.6e-76 287.3 231 73.6
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 3.4e-73 278.9 230 72.2
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 7.2e-71 271.2 226 75.7
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 7.2e-71 271.2 226 75.7
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 2.1e-70 269.6 223 76.2
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 2.3e-69 266.2 226 74.8
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 2.3e-69 266.2 226 74.8
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 2.6e-65 252.7 217 71.9
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 2.6e-65 252.7 217 71.9
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 5.0e-64 248.4 224 71.0
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 5.0e-64 248.4 221 70.6
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 5.0e-64 248.4 221 70.6
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 1.9e-63 246.5 224 71.0
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 3.9e-61 238.8 238 64.3
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.1e-60 237.3 240 67.9
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 9.1e-58 227.6 236 62.7
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 2.5e-55 219.5 250 62.0
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.9e-47 193.4 227 56.8
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 4.4e-44 182.2 224 54.0
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.7e-36 155.2 139 66.2
BNapus_Darmor_BZH_scaffold_241p00090 Brassica napus HOM05D004099 ORTHO05D004777 1.2e-33 147.5 164 62.2
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 1.7e-27 127.1 239 44.8
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 6.3e-27 125.2 228 42.1
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 2.4e-26 123.2 226 43.4
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.2e-26 121.3 227 43.2
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 9.2e-26 121.3 230 45.2
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 3.5e-25 119.4 134 53.7
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 7.8e-25 118.2 115 57.4
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 7.8e-25 118.2 245 44.5
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 1.7e-24 117.1 190 45.3
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 1.7e-24 117.1 142 50.7
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 2.3e-24 116.7 228 41.7
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 2.9e-24 116.3 115 58.3
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.9e-24 116.3 173 46.2
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 3.8e-24 115.9 119 57.1
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 8.6e-24 114.8 114 58.8
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 5.6e-23 112.1 192 42.7
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 5.6e-23 112.1 234 40.6
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 7.3e-23 111.7 229 42.4
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 9.5e-23 111.3 192 42.7
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.5e-23 111.3 169 47.9
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 1.2e-22 110.9 176 44.9
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 1.2e-22 110.9 176 44.9
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 1.6e-22 110.5 169 47.9
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 2.1e-22 110.2 194 44.8
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 2.8e-22 109.8 178 43.8
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 3.6e-22 109.4 169 47.3
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 1.4e-21 107.5 113 58.4
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 1.4e-21 107.5 190 42.1
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 1.8e-21 107.1 175 48.6
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 1.8e-21 107.1 137 52.6
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 2.3e-21 106.7 249 38.6
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 5.2e-21 105.5 172 46.5
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 6.8e-21 105.1 151 47.0
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 6.8e-21 105.1 177 42.9
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 6.8e-21 105.1 178 45.5
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 1.2e-20 104.4 172 45.3
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 1.5e-20 104.0 176 42.0
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 1.5e-20 104.0 114 53.5
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 2.0e-20 103.6 157 51.0
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 2.6e-20 103.2 167 43.1
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 5.7e-20 102.1 128 49.2
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 7.5e-20 101.7 94 59.6
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 1.3e-19 100.9 168 42.3
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 1.7e-19 100.5 127 48.0
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 2.9e-19 99.8 247 36.4
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 8.3e-19 98.2 139 46.8
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 1.1e-18 97.8 246 36.2
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 1.4e-18 97.4 139 47.5
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 3.2e-18 96.3 166 42.2
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 3.2e-18 96.3 114 55.3
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 4.1e-18 95.9 133 47.4
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 5.4e-18 95.5 137 47.4
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 5.4e-18 95.5 137 47.4
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 5.4e-18 95.5 200 44.0
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 5.4e-18 95.5 137 47.4
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 5.4e-18 95.5 137 47.4
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 7.0e-18 95.1 201 43.3
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 7.0e-18 95.1 139 46.0
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 7.0e-18 95.1 146 47.9
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 9.2e-18 94.7 203 38.9
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 1.6e-17 94.0 132 49.2
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.6e-17 94.0 134 47.8
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.6e-17 94.0 133 48.9
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 2.0e-17 93.6 200 43.5
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 2.0e-17 93.6 230 37.8
Potri.006G273100 Populus trichocarpa HOM05D004099 ORTHO05D004777 2.0e-17 93.6 149 41.6
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 2.7e-17 93.2 136 45.6
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 3.5e-17 92.8 199 42.2
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 3.5e-17 92.8 199 42.2
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 3.5e-17 92.8 199 42.2
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 3.5e-17 92.8 176 41.5
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 3.5e-17 92.8 113 50.4
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 7.8e-17 91.7 175 41.1
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 7.8e-17 91.7 152 42.8
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 1.7e-16 90.5 154 42.9
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 2.3e-16 90.1 175 40.6
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 2.3e-16 90.1 113 49.6
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 3.0e-16 89.7 86 58.1
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 6.6e-16 88.6 122 49.2
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 6.6e-16 88.6 133 47.4
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 6.6e-16 88.6 155 46.5
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 6.6e-16 88.6 139 41.7
TWI63G1022 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 8.6e-16 88.2 174 42.5
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 1.1e-15 87.8 178 42.1
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 1.9e-15 87.0 137 44.5
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 1.9e-15 87.0 138 41.3
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 1.9e-15 87.0 176 39.8
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 2.5e-15 86.7 79 59.5
Ciclev10009036m.g Citrus clementina HOM05D004099 ORTHO05D004777 3.3e-15 86.3 167 49.1
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.6e-15 85.5 129 45.0
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 9.5e-15 84.7 149 44.3
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 1.2e-14 84.3 260 32.7
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 3.6e-14 82.8 200 37.0
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 6.2e-14 82.0 140 44.3
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 8.0e-14 81.6 211 36.5
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 1.0e-13 81.3 99 48.5
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 1.4e-13 80.9 84 58.3
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 3.1e-13 79.7 140 41.4
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 8.9e-13 78.2 193 40.9
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 2.0e-12 77.0 135 40.7
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 2.0e-12 77.0 130 48.5
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 2.0e-12 77.0 194 40.2
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 2.0e-12 77.0 135 41.5
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 2.0e-12 77.0 130 48.5
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 2.6e-12 76.6 240 33.3
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 3.4e-12 76.3 137 40.9
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 3.4e-12 76.3 137 40.9
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 5.8e-12 75.5 151 37.7
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 7.5e-12 75.1 156 46.8
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 7.5e-12 75.1 156 46.8
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 7.5e-12 75.1 178 39.9
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 2.9e-11 73.2 189 39.7
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 3.7e-11 72.8 127 42.5
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 1.1e-10 71.2 161 42.2
Ah.12g061250 Amaranthus hybridus HOM05D004099 ORTHO05D004777 1.1e-10 71.2 139 43.9
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 1.1e-10 71.2 83 59.0
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 3.2e-10 69.7 154 37.7
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.2e-09 67.8 140 39.3
Nitab4.5_0000502g0140 Nicotiana tabacum HOM05D004099 ORTHO05D004777 2.7e-09 66.6 104 44.2
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 7.8e-09 65.1 112 41.1
MBI16_g09343_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 1.3e-08 64.3 164 34.1
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 1.7e-08 63.9 150 41.3
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 2.3e-08 63.5 122 41.0
BcaNung04136 Brassica carinata HOM05D004099 ORTHO05D004777 5.0e-08 62.4 107 45.8
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 6.6e-08 62.0 131 38.2
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 8.6e-08 61.6 165 35.8
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 3.3e-07 59.7 73 43.8
Zm00001eb174750 Zea mays HOM05D002359 ORTHO05D002394 3.3e-07 59.7 165 35.8
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 5.6e-07 58.9 73 43.8
Aqoxy7G02919 Aquilegia oxysepala HOM05D002359 ORTHO05D002394 7.3e-07 58.5 114 43.9
Zm00001eb035860 Zea mays HOM05D002359 ORTHO05D002394 9.5e-07 58.2 58 55.2
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 1.6e-06 57.4 108 42.6
Oeu018566.1 Olea europaea HOM05D004099 ORTHO05D004777 2.1e-06 57.0 92 45.7
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 2.8e-06 56.6 169 33.7
SGA_v2.0_scaffold193G40664 Striga asiatica HOM05D004099 ORTHO05D004777 3.6e-06 56.2 117 34.2
CiPaw.04G143200 Carya illinoinensis HOM05D002359 ORTHO05D002394 4.7e-06 55.8 124 38.7


User provided reference genes

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