Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 2.5e-41 171.8 94 100.0
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 4.2e-36 154.5 125 74.4
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 2.7e-35 151.8 97 86.6
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 4.6e-35 151.0 92 88.0
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 4.6e-35 151.0 92 88.0
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 2.3e-34 148.7 97 85.6
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 8.7e-34 146.7 96 85.4
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 2.5e-33 145.2 96 84.4
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 3.7e-32 141.4 96 82.3
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.8e-31 139.0 96 81.2
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 2.2e-29 132.1 97 78.4
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 4.2e-28 127.9 121 64.5
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 1.2e-27 126.3 97 72.2
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 1.0e-21 106.7 93 61.3
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 1.3e-21 106.3 92 62.0
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 2.9e-21 105.1 95 58.9
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 2.9e-21 105.1 93 61.3
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 2.9e-21 105.1 95 62.1
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 2.5e-20 102.1 89 62.9
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 3.2e-20 101.7 92 60.9
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 3.2e-20 101.7 97 59.8
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 3.2e-20 101.7 97 59.8
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 4.2e-20 101.3 94 59.6
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.2e-19 99.8 92 62.0
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.6e-19 99.4 94 58.5
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 1.0e-18 96.7 94 58.5
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 1.0e-18 96.7 92 55.4
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 1.3e-18 96.3 95 60.0
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 1.3e-18 96.3 89 56.2
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 1.8e-18 95.9 92 55.4
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 2.3e-18 95.5 89 55.1
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 6.7e-18 94.0 94 56.4
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.1e-17 93.2 97 58.8
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 2.5e-17 92.0 90 55.6
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 2.5e-17 92.0 76 59.2
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 2.5e-17 92.0 94 55.3
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 3.3e-17 91.7 101 53.5
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 9.7e-17 90.1 99 50.5
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 9.7e-17 90.1 92 52.2
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 1.6e-16 89.4 93 58.1
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 2.2e-16 89.0 98 50.0
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 4.8e-16 87.8 77 53.2
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 6.3e-16 87.4 92 46.7
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 1.4e-15 86.3 88 53.4
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.4e-15 86.3 93 53.8
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 2.4e-15 85.5 98 48.0
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 5.3e-15 84.3 95 51.6
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 6.9e-15 84.0 77 51.9
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 6.9e-15 84.0 94 47.9
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 6.9e-15 84.0 77 51.9
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 2.0e-14 82.4 101 47.5
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 2.6e-14 82.0 66 62.1
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 2.6e-14 82.0 77 49.4
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 4.5e-14 81.3 77 48.1
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 4.5e-14 81.3 71 56.3
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 5.9e-14 80.9 99 48.5
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 7.7e-14 80.5 64 60.9
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.0e-13 80.1 75 56.0
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.0e-13 80.1 75 56.0
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 2.9e-13 78.6 89 47.2
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 3.8e-13 78.2 76 55.3
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 3.8e-13 78.2 76 50.0
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 5.0e-13 77.8 75 54.7
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 5.0e-13 77.8 79 51.9
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 5.0e-13 77.8 76 55.3
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 6.5e-13 77.4 71 53.5
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 6.5e-13 77.4 122 45.1
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 1.1e-12 76.6 85 50.6
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 1.4e-12 76.3 85 49.4
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.9e-12 75.9 94 41.5
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 2.5e-12 75.5 75 45.3
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 2.5e-12 75.5 64 59.4
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 2.5e-12 75.5 64 59.4
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 4.2e-12 74.7 75 50.7
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 7.2e-12 73.9 73 53.4
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 1.2e-11 73.2 75 46.7
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 2.1e-11 72.4 87 46.0
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 6.1e-11 70.9 62 54.8
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 1.4e-10 69.7 75 46.7
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 2.3e-10 68.9 87 47.1
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 3.0e-10 68.6 57 56.1
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 3.0e-10 68.6 55 61.8
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 3.9e-10 68.2 65 53.8
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 5.1e-10 67.8 58 62.1
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 6.7e-10 67.4 77 45.5
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 4.3e-09 64.7 85 45.9
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 3.7e-08 61.6 104 39.4
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 3.7e-08 61.6 49 59.2
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 6.3e-08 60.8 106 43.4
AagrBONN_evm.TU.Sc2ySwM_228.4082 Anthoceros agrestis HOM05D007649 ORTHO05D009668 6.9e-07 57.4 70 44.3
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 2.0e-06 55.8 58 55.2
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 7.7e-06 53.9 52 57.7


User provided reference genes

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